Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4335 ATGGCTAGAACTTCCAAATCTCACGTTTCTAGCGCCTCCAATTCATCTTCTTCCGAAGAAGAAGAGGTTGAGAACGTGAACGATCAGATCGAAGAAGAGGACGAAGAAGAACTCGAAGCCGTTGCTCGTTCCGCTGGCTCCGACGATGAGGATGCGCCAGATGAACCCGCCGCCGATGATGACGGCGTCGATGAAGAGGATGAAAATCAGGATGAAAGTGTTAATCCTGAGATTAGTAAGCGTGAGAAAGCTAGGTTAAAGGAATTGGAACGGTTGAAGAAACAGAAGGTTCAGGAGATATTGGATGCACAAAATGCATCTATTGATGCCACTATGAATACTAAAGGAAAAGGACGATTGAAGTATCTGTTGCAGCAAACTGAGTTGTTTGCTCATTTTGCTAAAAGTGGTCAATCTTCGTCTCAGAAGAAGGCTAAGGGAAGGGGACGCCATGCATCAAAGATTACTGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGGAGGGTTAGGAAATACACGGCTGGTTACTCAACCATCATGTATCCAAGGGAAAATGCGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGTCTGTATGAGAATGGAATAAACGGAATTTTAGCTGATGAAATGGGACTTGGCAAAACTTTACAAACTATATCTTTGCTGGGCTATCTACATGAGTTCAGAGGAATAACGGGTCCACATATGGTTGTTGCTCCAAAATCCACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCAGTTTTACGGGCAGTCAAGTTCCTCGGTAGCCCTGATGAAAGGAAGCATATAAAAGAGGAGTTATTGGTGGCTGGAAAATTTGATGTGTGTGTGACAAGTTTTGAAATGGTAATCAAGGAGAAACCCACATTCCGTCGATTTAGTTGGCGTTATGTTATTATTGATGAAGCCCATCGGATAAAAAATGAGAACTCCCTCCTGTCCAAAACAATGAGGGAATATAAAACAAACTACCGACTCCTTATAACTGGCACACCGCTACAGAACAATCTTCATGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAACTTCACAAAGTCCTCCGTCCATTTCTTCTTCGCAGGTTGAAATCAGATGTCGAGAAAGGGTTGCCACCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCCCAAATGCAGAAACAATATTATAAGGCTTTATTACAGAAGGATCTTGAGGTTGTGAATGCTGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTTCGTAAATGTTGTAATCACCCATATCTTTTCCAAGGAGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATATCATTACCAGTGCTGGCAAAATGGTTCTAATGGATAAATTACTTCCCAAGCTAAAAGAGCGGGATTCTAGGGTCCTAATATTTTCACAGATGACTAGGCTGCTAGATATACTTGAAGATTATTTGATGTTTCGTGGATACCAATACTGTCGCATAGATGGTAATACTGGTGGAGATGACCGTGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTTTTGTTGTCTACTCGAGCCGGAGGTCTTGGCATCAATCTTGCTACTGCCGATGTTGTTATTCTTTATGATAGTGACTGGAACCCACAAGCTGACTTGCAGGCTCAAGATCGAGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCAGATTTTGCACCGAGTATACGATTGAGGAAAAAGTTATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTAATTCAGCAAGGGCGATTAGCTGAGCAGAAGACTGTTAATAAAGACGATTTGCTCCAAATGGTTAGATTCGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAAGATATTGATAGAATTATCGCCAAAGGAGAGGAATCAACAGCTGAACTTGATGCTAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGATTTGCTTGATTTTGATGATGAGAAGGATGAGGACAAAGTTGATTTCAAAAAAATTGTGAGTGACAACTGGGTTGAGCCATCAAGAAGAGAAAGGAAGCGAAATTACTCAGAGTCTGAATACTTCAAACAAACAATGCGCCAAGGTGCTCCTACTAAACCTAAAGAACCCCGAATTCCTAGAATGCCTCAATTGCATGATTTTCAGTTCTTCAACACACACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGTTATCTAATGCAAGCACATCAGAAGAATCAGGTAAAAGACTCCATAGATGTTGATGAACCAGAAGAAGTGGGAGAGCCATTGACTGCTGAAGAGTCCGAAGAAAAGGAGCACCTGCTAGAGCAGGGATTTTCATCATGGAGCCGAAAAGATTTTAACACTTTCATTAGGGCATGTGAAAAGTATGGTCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAGACGGAAGAAGAAGTTGAAAGATATGCAGAAGTTTTCAGAGAGCGATACAAGGAATTGAATGATTACGATAGAATTATTAAAAACATTGAAAGAGGGGAGTCTAGAATAGCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTAGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGATACTATATGGACAAAACAAAGGGAAATTATACAATGAAGAATGTGATCGATTCATGATATGCATGACTCACAAGCTTGGCTATGGTAATTGGGATGAATTGAAAGCTGCATTTCGAATGTCACCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCACGCACAACTCAGGAATTAACAAGGAGATGTGACACCCTCATTCGTTTGGTAGAGAAGGAAAATCAAGAATATGATGAAAGAGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCCTCCAAGAGTACAACTCCATCAAAGCGCGTCTTACCAAGACAGGCAGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACTATGGATTACTATGTTAGCTCGGGGAAGAGAAAAAAGTAA 3192 0.4079 MARTSKSHVSSASNSSSSEEEEVENVNDQIEEEDEEELEAVARSAGSDDEDAPDEPAADDDGVDEEDENQDESVNPEISKREKARLKELERLKKQKVQEILDAQNASIDATMNTKGKGRLKYLLQQTELFAHFAKSGQSSSQKKAKGRGRHASKITEEEEDEEYLKEEEGGLGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGSPDERKHIKEELLVAGKFDVCVTSFEMVIKEKPTFRRFSWRYVIIDEAHRIKNENSLLSKTMREYKTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHIITSAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEESTAELDAKMKKFTEDAIKFKMDDTADLLDFDDEKDEDKVDFKKIVSDNWVEPSRRERKRNYSESEYFKQTMRQGAPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEVGEPLTAEESEEKEHLLEQGFSSWSRKDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAEVFRERYKELNDYDRIIKNIERGESRIARKDEIMKAIGKKLDRYKNPWLELKILYGQNKGKLYNEECDRFMICMTHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLASKSTTPSKRVLPRQAESPSLKKRKQLTMDYYVSSGKRKK* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4335 1063 Gene3D - 839 893 - -
Mtr4g4335 1063 Pfam Helicase conserved C-terminal domain 493 603 IPR001650 -
Mtr4g4335 1063 Coils Coil 79 106 - -
Mtr4g4335 1063 MobiDBLite consensus disorder prediction 21 39 - -
Mtr4g4335 1063 SMART ultradead3 184 376 IPR014001 -
Mtr4g4335 1063 CDD SANT 842 882 IPR001005 -
Mtr4g4335 1063 MobiDBLite consensus disorder prediction 809 832 - -
Mtr4g4335 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 684 IPR027417 -
Mtr4g4335 1063 SUPERFAMILY Homeodomain-like 842 892 IPR009057 -
Mtr4g4335 1063 Gene3D - 409 701 IPR027417 -
Mtr4g4335 1063 MobiDBLite consensus disorder prediction 1010 1027 - -
Mtr4g4335 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 403 IPR027417 -
Mtr4g4335 1063 SUPERFAMILY Homeodomain-like 894 1016 IPR009057 -
Mtr4g4335 1063 MobiDBLite consensus disorder prediction 1010 1047 - -
Mtr4g4335 1063 Gene3D - 927 1030 - -
Mtr4g4335 1063 Gene3D - 189 404 IPR038718 -
Mtr4g4335 1063 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 751 841 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mtr4g4335 1063 ProSiteProfiles SANT domain profile. 838 890 IPR017884 -
Mtr4g4335 1063 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 365 IPR014001 -
Mtr4g4335 1063 MobiDBLite consensus disorder prediction 1 84 - -
Mtr4g4335 1063 MobiDBLite consensus disorder prediction 1 20 - -
Mtr4g4335 1063 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 493 644 IPR001650 -
Mtr4g4335 1063 SMART helicmild6 519 603 IPR001650 -
Mtr4g4335 1063 CDD SF2_C_SNF 483 614 - -
Mtr4g4335 1063 PANTHER SNF2/RAD54 HELICASE FAMILY 11 1063 - -
Mtr4g4335 1063 Coils Coil 16 43 - -
Mtr4g4335 1063 Gene3D ISWI, HAND domain 740 838 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mtr4g4335 1063 MobiDBLite consensus disorder prediction 51 72 - -
Mtr4g4335 1063 Pfam SNF2-related domain 201 468 IPR000330 GO:0005524|GO:0140658
Mtr4g4335 1063 Coils Coil 989 1023 - -
Mtr4g4335 1063 SMART sant 839 888 IPR001005 -
Mtr4g4335 1063 Pfam HAND 752 833 IPR015194 GO:0003677|GO:0006338|GO:0031491
Mtr4g4335 1063 CDD DEXHc_SMARCA1_SMARCA5 185 405 IPR044754 GO:0005524
Mtr4g4335 1063 Pfam SLIDE 896 1006 IPR015195 GO:0003677|GO:0005634|GO:0006338
Mtr4g4335 1063 Gene3D iswi atpase 894 926 - -
Mtr4g4335 1063 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 11 1063 - -
Mtr4g4335 1063 MobiDBLite consensus disorder prediction 134 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4335 Mtr-Chr4 57391413 57399645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4335 209 630 RAD5 or RAD16-like Gene Family AT1G02670 26.733 1.04e-41 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr4g4335 SNF2_N 1.4e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4335 K11654 - gmx:100791510 1826.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4335 4 57391413 57399645 Mtr4g4335 4 57391413 57399645 ECH
Mtr4g4335 4 57391413 57399645 Mtr2g0662 2 6684149 6692991 PCT