Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4333 ATGAGTAACAGAAAACGTGCCACTACTATTAAAACCGAAGAGGTTCTAAATGTTGAACGTGAAAGAAGGAACAAATTGAAGCAAATGTTCACTCACCTCACTACCACTGTCCCTACTCTCCACCCCAATGCTACACAGGAAGTGATTGTGAACGAAACAATCCAGTACATTAAGGAACTTGAGGAAAAGAAGAAAATTTTGGAGGAGATGAAGGAATCAAAATCAAAGAAACATGTTGAAAGGGGTTTTAATTTGTTGGTTCCCTGTCGTAATAGGAATCCCAATTGCTCTGTTACGGTTACTGGTTCAAGCAATGTGGCTTTCTTTGGGATTGAATCTGTGGCTAAACCTGGGTTGATTACTGTTATTTTGAAGGTGTTCTTGAAGAATGAAGCTGAGGTTTTAGCTGCTAATGTTTCTGTTAATGATGGGAATTTGATCTTGGCAATCACTGCTTTGGTTCAAAATGGTGCTGTTATTGAGAAGATTAAGAGAGAGATTATGAGTTTGTAG 513 0.384 MSNRKRATTIKTEEVLNVERERRNKLKQMFTHLTTTVPTLHPNATQEVIVNETIQYIKELEEKKKILEEMKESKSKKHVERGFNLLVPCRNRNPNCSVTVTGSSNVAFFGIESVAKPGLITVILKVFLKNEAEVLAANVSVNDGNLILAITALVQNGAVIEKIKREIMSL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4333 170 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 169 - -
Mtr4g4333 170 CDD bHLH_SF 19 62 - -
Mtr4g4333 170 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 77 IPR036638 GO:0046983
Mtr4g4333 170 Coils Coil 50 77 - -
Mtr4g4333 170 Gene3D - 13 83 IPR036638 GO:0046983
Mtr4g4333 170 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 60 IPR011598 GO:0046983
Mtr4g4333 170 Pfam Helix-loop-helix DNA-binding domain 18 61 IPR011598 GO:0046983
Mtr4g4333 170 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 169 - -
Mtr4g4333 170 SMART finulus 16 66 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4333 19 71 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 43.396 3.96e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g4333 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4333 - - cam:101491921 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4333 4 57384079 57384946 Mtr4g4333 4 57384079 57384946 ECH