Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4329 ATGGGGTGTGTGTTTGGGAAAGAGGGTTCAGAAAGGAAGAAAGAGGTAGTGAAAGTTGTTGCTAAGGTGGAGGAGTTTGAGTGTGAGGTTCAAAATGATATGAAAAATGAGCAAGATGGTGGAGAGGATGAGAAGAGGAGGAGACAAAGGGCAAGGAGAGAGAGGAGGCAATCTTTGAAGGCTAATCCAAAATTGAGCAATCCACCTAACCATATACATGGTGAACAAGTGGCTGCTGGGTGGCCATCTTGGCTTTCCAAGGTTGCTGGAGAAGCCATACATGGATTGACGCCTCGAAGGGCCGATTCTTTTCACAAACTTGATAAGATTGGACAAGGTACATATAGCAATGTTTACAAAGCTAAGGATACTATAACTGGGAAAATTGTTGCATTAAAGAAGGTTCGTTTTGACAATTTAGAACCAGAGAGTGTGAAATTCATGGCCAGAGAAATTCTGATTCTGCGTCGTCTTGATCATCCCAATGTTATCAAACTAGAAGGTTTAGTGACTTCTAGGATGTCATGTAGTTTGTATCTTGTCTTTCAATACATGGAGCATGATTTGGCTGGACTTTCAACGAGTCCCGCAATTAAGTTTACTATGTCTCAGCTACTTTCTGGACTGGAACACTGTCACAACCGTAATGTGCTGCATCGTGATATAAAGGGATCAAACCTTCTTGTTGACAATGAAGGAATTCTCAGGATTGCTGATTTTGGATTAGCATCCTTCTTTGATCCTAATCACAAACATCCTATGACTAGTAGGGTGGTTACTTTATGGTATCGATCTCCAGAACTTCTTCTTGGAGCCACAGATTATGGTGTAGGAATCGACCTTTGGAGTGCTGGCTGTATTCTTGCTGAATTATTGGCTGGAAGGCCTATTATGCCTGGTAGAACAGAGGTGGAACAACTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGGCAAAGTTGCCACATGCTACAATTTTTAAGCCACAACAATCATATAAACGGTGCATAGCAGAGAAATTTGAAGATTTCCCACTATCATCATTACCACTAATTGACACCCTTCTGGCAATCGATCCAGCTGAACGTCAAACTGCCACTGCTGCATTGCACAGCGAATTCTTTACAACCCAACCTTATGCTTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGTAAGGAGATGGACACAAAGCTTCGGGACGAAGAAGCTAGAAGATTAAGAGCTGTTGGCAAAGGTGATGCTGTTGGCGCTAAGAAATCTCGTTCGCGTGATCGAAGTGGGAGGGGAATTCCAGTTCCAGAGGTCAATGCTGAGCTGCAAGCCAATATCGATAGATGGAGACTGGTAACGCGCGCTAATGCTAAGAGTAAAAGTGAGAAGTTTCCTCCTCCACATCAAGATGGAACTTTAGGCTATCCTTTTGGTTCTTCATGTCATATGAATCCAGTTTTTGATCCTCCTGATGTTCCATTTAGTTCCACAGACTTCTCATATCATAAACCAAATATTCAGACCTGGTCCGGCCCATTGGTGGAACCGAGGGTGAGTGCGCCAAGGAGAAAGAAGAACAAGGCAGGTGACCGGCATATACAATCGAAGTCATCAAAGGACATAAAAAGATAG 1647 0.4274 MGCVFGKEGSERKKEVVKVVAKVEEFECEVQNDMKNEQDGGEDEKRRRQRARRERRQSLKANPKLSNPPNHIHGEQVAAGWPSWLSKVAGEAIHGLTPRRADSFHKLDKIGQGTYSNVYKAKDTITGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFQYMEHDLAGLSTSPAIKFTMSQLLSGLEHCHNRNVLHRDIKGSNLLVDNEGILRIADFGLASFFDPNHKHPMTSRVVTLWYRSPELLLGATDYGVGIDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWKKAKLPHATIFKPQQSYKRCIAEKFEDFPLSSLPLIDTLLAIDPAERQTATAALHSEFFTTQPYACEPSSLPKYPPSKEMDTKLRDEEARRLRAVGKGDAVGAKKSRSRDRSGRGIPVPEVNAELQANIDRWRLVTRANAKSKSEKFPPPHQDGTLGYPFGSSCHMNPVFDPPDVPFSSTDFSYHKPNIQTWSGPLVEPRVSAPRRKKNKAGDRHIQSKSSKDIKR* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4329 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Mtr4g4329 548 Pfam Protein kinase domain 104 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4329 548 ProSiteProfiles Protein kinase domain profile. 104 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4329 548 MobiDBLite consensus disorder prediction 509 548 - -
Mtr4g4329 548 Gene3D Transferase(Phosphotransferase) domain 1 186 419 - -
Mtr4g4329 548 CDD STKc_CDK9_like 104 381 - -
Mtr4g4329 548 PANTHER OS01G0367700 PROTEIN 47 533 - -
Mtr4g4329 548 MobiDBLite consensus disorder prediction 418 436 - -
Mtr4g4329 548 MobiDBLite consensus disorder prediction 30 49 - -
Mtr4g4329 548 PANTHER CELL DIVISION PROTEIN KINASE 47 533 - -
Mtr4g4329 548 SUPERFAMILY Protein kinase-like (PK-like) 98 386 IPR011009 -
Mtr4g4329 548 SMART serkin_6 104 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4329 548 MobiDBLite consensus disorder prediction 30 73 - -
Mtr4g4329 548 Gene3D Phosphorylase Kinase; domain 1 92 185 - -
Mtr4g4329 548 MobiDBLite consensus disorder prediction 418 440 - -
Mtr4g4329 548 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4329 Mtr-Chr4 57352639 57356266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4329 99 419 Core Cell Cycle Gene Families AT5G10270 49.419 8.44e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Mtr4g4329 Pkinase 5.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4329 K08819 - gmx:100814207 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4329 4 57352639 57356266 Mtr4g4329 4 57352639 57356266 ECH
Mtr4g4329 4 57352639 57356266 Mtr2g0670 2 6772640 6777500 PCT