Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr4g4320 | ATGGGTCGATATCGAAGCCGTAGCAGAAGCTACAGCCCTCGCCGGCGTAGCAGAACTCCACCACCTCGCGGTCGCAAGCGTTACGAAGATGATCGCTATCCTGACAACAGGTCTCGCAGAGACCGTCGTTCTCCTCTTCCTTCTGGATTACTCGTTCGTAATCTCCCTCTTGATGCAAGACCTGAAGATCTTAGGGGTCCATTTGAACGCTATGGTCCTGTCAAGGATGTTTACCTTCCGAGAAACTATTACACTGGTGAGCCTCGTGGCTTTGGATTTGTGAAATACCGACATGGTGAAGATGCAGCAGAGGCTAAGCAACAACTTAATCACACTATAATTGGTGGACGTGAAATAAGAATTGTATTTGCTGAGGAAAATAGGAAAACCCCTCAAGAAATGCGTGTTACTACTTCTCATGGAAGTGGTCGAAGTGGAGGTGGTGGTAGTAGAAGGAGAGCTCGATCAAGATCTCCACGACGCAGCCGTTATCGATCCTACTCTAAGTCTCCATCACCAGCCAGGGATGATTCAAGGGATGGCAGGGGTAGGGATGATTATTCCCCAAAGCGATCAAGATCTTATTCTAGGTCTGTCTCTCCCGGTGATGGGAAGGATGACAGGTCCCCTCGTGCCAAGGATGACAGAAGTTCCCCTCGTGCCAAGGATGGCGGAAGGTCTCCTCGCGCCAAGGATGATGGAAGGTCCCCTCGTGCCAAGGACGACGGAAGGTCCCCTCATGCCAAGGACAATGGAAGGTCTCCTCGTACCAAGGACGACAGAAGGTCCCCTTGTGTCAAGGACGAGAGAAGGTCCTCCCGTGCCAAGGAGAATGGCCGAAGTCCAATTGATGAGAAGGATCTGGTGCCTAGCAGATCTCCAAGCCCCAGGGGTGATGATCGCAGTCCTTCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGA | 945 | 0.5185 | MGRYRSRSRSYSPRRRSRTPPPRGRKRYEDDRYPDNRSRRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRVTTSHGSGRSGGGGSRRRARSRSPRRSRYRSYSKSPSPARDDSRDGRGRDDYSPKRSRSYSRSVSPGDGKDDRSPRAKDDRSSPRAKDGGRSPRAKDDGRSPRAKDDGRSPHAKDNGRSPRTKDDRRSPCVKDERRSSRAKENGRSPIDEKDLVPSRSPSPRGDDRSPSRSRSRSYSPR* | 315 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr4g4320 | 314 | MobiDBLite | consensus disorder prediction | 23 | 46 | - | - | |
| Mtr4g4320 | 314 | MobiDBLite | consensus disorder prediction | 170 | 192 | - | - | |
| Mtr4g4320 | 314 | SMART | rrm1_1 | 49 | 122 | IPR000504 | GO:0003723 | |
| Mtr4g4320 | 314 | SUPERFAMILY | RNA-binding domain, RBD | 50 | 153 | IPR035979 | GO:0003676 | |
| Mtr4g4320 | 314 | MobiDBLite | consensus disorder prediction | 125 | 314 | - | - | |
| Mtr4g4320 | 314 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 1 | 274 | - | - | |
| Mtr4g4320 | 314 | Gene3D | - | 3 | 140 | IPR012677 | - | |
| Mtr4g4320 | 314 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 48 | 126 | IPR000504 | GO:0003723 | |
| Mtr4g4320 | 314 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
| Mtr4g4320 | 314 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Mtr4g4320 | 314 | MobiDBLite | consensus disorder prediction | 150 | 164 | - | - | |
| Mtr4g4320 | 314 | MobiDBLite | consensus disorder prediction | 200 | 307 | - | - | |
| Mtr4g4320 | 314 | PANTHER | SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 | 1 | 274 | - | - | |
| Mtr4g4320 | 314 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 50 | 120 | IPR000504 | GO:0003723 | |
| Mtr4g4320 | 314 | SMART | rrm2_1 | 49 | 122 | IPR003954 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr4g4320 | Mtr-Chr4 | 57277965 | 57282531 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr4g4320 | 52 | 110 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 44.068 | 6.68e-07 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr4g4320 | K12900 | - | gmx:100788749 | 249.21 |