Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4261 ATGGGTGGTTCATGGAGTAATAATAACAGTAATAACAGAAACATAAGTAGAAGAAGACATAATAGTTACCATGAACACTATCCACCACCTCCTTACTATTATTACTCTTCTCAGCCTCAGCCTTTGATGCCACAGCCACAGCCACAGCCACAGCCTCCTCAAGGTTACTTCCCTCCTCATCAATACTACTCAAATGGATATACTCCTGCCAATTCCATGCTGCCTCAGCCTCACCATCCTTTCTATGCAACAACAAATACTCAACCCCTTGATATTGATGTAAATGTTGTTCAAGCACTTCCACCACCACCTCCATACACTGACCATGAAACTGCAAAGAAGGTAAGGAATGATGTGAACTTGCATAAACACACTCTGCAGCTTTACCAGGATCCCAACAATCCCGATCACCACTTGATTTCCTTTGTTTTTGATGCCCTCTTTCCTGGCAGAATTACAATCTTCTACATAGCCAGAGAAGAAGAACATCAATGTAGGTTTGTTCCTCTATTTCCCGAAGCATTTGAGCCGATCACGTTCCCATTCCAGAAAGGAGTTGGCCAGAAATTTTGTCAGCCATCAGGAACAGGCATTGACTTAGGTTTCTTTGATTTGGATGATCTTTCAAACCCTTCACCTGAAGAAGACATATTTCCCCTCGTCATATGCGCTGAATCAACGCCTTTGCAAGATCATGATACTCCTGTCAGTTCCTTAGCAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAAAACAGTGACACTGGTTCTTTCCAGGTTAAAGTAGTTAGGCAGATTCTATGGATCGATCAAGTTCGTTATGAGCTCAGAGAGTTGTATGGAATTGGTAACTCAACAGCACCTGATTTCGATCGTAATGATCCTGGAAAGGAGTGTGTAATATGCATGACAGAACCAAAGGATACTGCTGTCTTACCTTGCCGACACATGTGTATGTGCGGCGAGTGTGCAAAAGCTTTGCGGGTTCAATCAAACAATTGCCCTATATGCCGCCAACCAATTGAGCAACTGATAGAGATCAAGATAAACAATGATGACCAATGA 1077 0.428 MGGSWSNNNSNNRNISRRRHNSYHEHYPPPPYYYYSSQPQPLMPQPQPQPQPPQGYFPPHQYYSNGYTPANSMLPQPHHPFYATTNTQPLDIDVNVVQALPPPPPYTDHETAKKVRNDVNLHKHTLQLYQDPNNPDHHLISFVFDALFPGRITIFYIAREEEHQCRFVPLFPEAFEPITFPFQKGVGQKFCQPSGTGIDLGFFDLDDLSNPSPEEDIFPLVICAESTPLQDHDTPVSSLADASPHMQITQAVLEKNSDTGSFQVKVVRQILWIDQVRYELRELYGIGNSTAPDFDRNDPGKECVICMTEPKDTAVLPCRHMCMCGECAKALRVQSNNCPICRQPIEQLIEIKINNDDQ* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4261 358 MobiDBLite consensus disorder prediction 1 62 - -
Mtr4g4261 358 Pfam Zinc finger, C3HC4 type (RING finger) 301 347 - -
Mtr4g4261 358 SMART ring_2 303 341 IPR001841 -
Mtr4g4261 358 MobiDBLite consensus disorder prediction 1 16 - -
Mtr4g4261 358 ProSiteProfiles Zinc finger RING-type profile. 303 342 IPR001841 -
Mtr4g4261 358 PANTHER MAHOGUNIN 1 357 IPR045194 GO:0061630
Mtr4g4261 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 352 IPR013083 -
Mtr4g4261 358 SUPERFAMILY RING/U-box 302 348 - -
Mtr4g4261 358 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 357 - -
Mtr4g4261 358 MobiDBLite consensus disorder prediction 32 57 - -
Mtr4g4261 358 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 302 342 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4261 Mtr-Chr4 56724009 56726243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4261 106 358 C3H Transcription Factor Family AT3G06140 60.630 3.67e-102 303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4261 4 56724009 56726243 Mtr4g4261 4 56724009 56726243 ECH