Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4252 ATGCGTGTTGGAGGACGGAGAAAACGCCGGCGATTGATCCGCGGAGACACAACTTCCTGGGTTAAAGCTGGTTATTATTTTTCCAGTAATGAAATGGAAGCTTCGGAGATAAAATCAACACTTTTCACACACCTCTTATGTGCTTTTGCTTTCATAAATTCCACAGACTACAGCATCTTTATAAATGACTCTGAGTATTCTAAATTCGACTCCTTCACCACCAGAGTAAAGCTTCAAAATCCTTCTGTTACATCTCTTCTATCAATCTACACTGGAGGAGAAAATTCTTCACTTTTTAACTCGTTGATAAACCAATCTTCTTATAGAAAATCTTTCATTGATTCCTCCATCAGAACGGCAAGACGATTTGACTTTCAAGGCATAGACTTTTGTGGTGCAGGGCCAAAACAGGGCAAAGATCTTGTTAATTTCGCAACCCTTTTGAAAGAGTGGCGAATTGCAATAACTTCTGAGGCAAGAAACACTAAAAGATCAGAATTAGTGTTGGTGATGACAGGTTATTATCTTAAAGCTTCAGATTCCCTTAGTTATCCTTTTGAATCAATGCAGAAGAATTTGGATTGGGTTCATTTTGTTGCATATAATTACTATCTTCCTAAAAGGGACAGTGTCACACGTTTTCATGCACCTTTATATGGTTCATCTGGCTGGGAAAATACTGATTCAGGTATCAAAGAGTGGAGAAAAAGAGGATTTTCTTCTAACAAACTTGTAATTGGTTTGCCTTATCATGGATTTGCATGGACACTTGTGAAACCAGGTGAAGGTGGTGTTGGTAGACCAACTTCTGGTCCTGCTATTACAATGGATGGTTCAATGGCTTATAAGTTTATAAAAAGTTACATCAGAGGCTTTGGTGATGGAGTAGTTTCACGTTATAATGACACTTTTGTGGTGAATTATTTCACTGTTGAATCTACATGGGTTAATTTTGATGATGTGGAAGCTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTACAGTGTGTTCCAAGTTGGGAGTGATGACAATTGGGTCCTTTCAACGGCAGCTCATGAAGTAAATAAAGATCATCATAACAGAAGGTTGCTGATAGTTGTTCTGGTTACTGCTTTGACTGCTACCTTTCTCTTGGCAATGGTATTTTTTTGCTACTACCACAAAGTGATAACTATTACAAGAATGGTGTACAGATTGAGGATACATTTATCAGCACCTGACGAAGATCTCAATGAAAATGGTTCTGATTTGATAGTATTTGATTATCTCACAATAAAACTTGCAACAAGTTACTTCTCAACAGAAAATAAGGTTGGAGAGGGTGGATTTGGTGCAGTGTACAAGGGGAAATTATTCAATGGAGTAGAAATAGCTGTCAAACGACTCTCAAAAACCTCAAAACAAGGACTTGAAGAGTTCAAAAATGAGATCGCACTTACAGCAAAACTACAGCATGTTAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAGGAACGAGAAGCTTCTAATCTATGAATACCTCCCAAATAAAAGCTTAGACCATTTTCTCATTGATCCAAGGAAATCAATTCTTCTAGATTGGAGGAGACGCGTGAATATCATTGAAGGAATAACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATCCACCGAGATATTAAAGCTAGTAATGTTTTGTTAGACCATGAGATGAATCCTAAGATTTCAGATTTTGGTATGGCTAGAATTTTTGGAAAGTATGAACTTGAAGCAAACACAAGCAGGATCGTGGGAACGTATGGGTATGTACCTCCCGAGTATGTCAGAAAAGGCATATACTCACCCAAGTACGACGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGTGGAAACAAGACTTCATGTTATTACGGCCCACATGAAAATATGAACCTTTTGGAATATGCATATGGGCTGTGGATGGAAGGGAGAGGTGTGGAATTTTTTGACCCTTCATTGGATGATACAGCATCAGCTTGTAAAATCATGAGATGCATGCAAGTGGCTCTTTTGTGTGTTCAAGAGAACTCAGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTAATCAAGAATGAAGGTAGGCCAATTGGTACTCCCAACATGCCTGCCTTTTCAATGAACAAACATGAAGATGATAAGGGAGATACATTTAACTCTGGGTTCAATTTATATTCAATCAATGATGTTACAATTTCTCAAATGTTACCAAGATAA 2271 0.373 MRVGGRRKRRRLIRGDTTSWVKAGYYFSSNEMEASEIKSTLFTHLLCAFAFINSTDYSIFINDSEYSKFDSFTTRVKLQNPSVTSLLSIYTGGENSSLFNSLINQSSYRKSFIDSSIRTARRFDFQGIDFCGAGPKQGKDLVNFATLLKEWRIAITSEARNTKRSELVLVMTGYYLKASDSLSYPFESMQKNLDWVHFVAYNYYLPKRDSVTRFHAPLYGSSGWENTDSGIKEWRKRGFSSNKLVIGLPYHGFAWTLVKPGEGGVGRPTSGPAITMDGSMAYKFIKSYIRGFGDGVVSRYNDTFVVNYFTVESTWVNFDDVEAIKEKVSYAKKNGLLGYSVFQVGSDDNWVLSTAAHEVNKDHHNRRLLIVVLVTALTATFLLAMVFFCYYHKVITITRMVYRLRIHLSAPDEDLNENGSDLIVFDYLTIKLATSYFSTENKVGEGGFGAVYKGKLFNGVEIAVKRLSKTSKQGLEEFKNEIALTAKLQHVNLVRLLGYCTKRNEKLLIYEYLPNKSLDHFLIDPRKSILLDWRRRVNIIEGITQGLLYLQEYSNFTIIHRDIKASNVLLDHEMNPKISDFGMARIFGKYELEANTSRIVGTYGYVPPEYVRKGIYSPKYDVYSFGVLLLQIISGNKTSCYYGPHENMNLLEYAYGLWMEGRGVEFFDPSLDDTASACKIMRCMQVALLCVQENSADRPSMLEVDSLIKNEGRPIGTPNMPAFSMNKHEDDKGDTFNSGFNLYSINDVTISQMLPR* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4252 756 Pfam Protein kinase domain 438 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4252 756 Gene3D Phosphorylase Kinase; domain 1 412 512 - -
Mtr4g4252 756 SMART 2g34 20 347 IPR011583 GO:0008061
Mtr4g4252 756 SMART serkin_6 437 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4252 756 Gene3D Glycosidases 35 349 - -
Mtr4g4252 756 Gene3D - 250 318 IPR029070 -
Mtr4g4252 756 SUPERFAMILY Protein kinase-like (PK-like) 420 723 IPR011009 -
Mtr4g4252 756 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 752 - -
Mtr4g4252 756 SUPERFAMILY (Trans)glycosidases 23 351 IPR017853 -
Mtr4g4252 756 Pfam Glycosyl hydrolases family 18 24 347 IPR001223 GO:0005975
Mtr4g4252 756 ProSiteProfiles Protein kinase domain profile. 437 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4252 756 SUPERFAMILY Chitinase insertion domain 251 318 IPR029070 -
Mtr4g4252 756 ProSitePatterns Protein kinases ATP-binding region signature. 443 465 IPR017441 GO:0005524
Mtr4g4252 756 CDD STKc_IRAK 443 704 - -
Mtr4g4252 756 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 20 363 IPR001223 GO:0005975
Mtr4g4252 756 Gene3D Transferase(Phosphotransferase) domain 1 513 713 - -
Mtr4g4252 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 558 570 IPR008271 GO:0004672|GO:0006468
Mtr4g4252 756 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 15 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4252 Mtr-Chr4 56614060 56620098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4252 425 756 Receptor kinase-like Gene Family AT4G11530 51.039 2.15e-110 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr4g4252 Glyco_hydro_18 1.9e-50 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4252 - - aprc:113847882 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4252 4 56614060 56620098 Mtr4g4252 4 56614060 56620098 ECH