Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4244 ATGTCAGGTTGGGACGAAGGAGGCGTATACTATAGCGACCAAGCACACTCATGGGACGACGGCCGCGGCGGCGAAACCGACGCCGCCATCTCCAACCACACCATTCTTCAAAAATTCAAAGAATTCATCCGTAACTTCGAAACCGGTAACAATGTCTTCCCTTACAGAGAAAGTCTCCTCCATAATCCCAAATATCTTCTCGTTGATATGGAAGATCTTGACTCTTTTGACCCTGATCTTCCCTCTAAACTCCGATCTGCTCCCGCCGATATTCTTCCTCTGTTTGAAACTGCGGCGGCGCAGGTTTTGGTGAGTTTGAAGACGAAGGTTGCTGGAGATACTGGTGATATGGAAGATGCTGCTCCTGGTGATGTTCAGATTCTTCTTACTTCTAAGGAGGATTCCGTTTCCATGAGATCGCTTGGGGCTCAGTACATTTCGAAGCTTGTTAAAATCGCTGGGATAACAATTGCTGCGTCGAGGACTAAGGCAAAAGCAACATATGTGACCTTGATATGTAAGAATTGTAAGAAGGGGAAGCAAGTTCCGTGTCGGCCAGGACTTGGTGGAGCAGTTGTTCCACGTTCATGTGATCATGTTCCTCAGCCTGGAGAAGAACCTTGTCCAATTGATCCGTGGCTTATTGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACCTTGAAGTTGCAAGAAAATCCGGAGGATGTTCCAACTGGAGAGCTTCCTAGAAACTTGCTTCTATCCGTTGATCGACATCTTGTTCAAACTGTAGTGCCTGGCTCAAGATTAACAATCGTTGGAATCTATAGTATTTTTCAGGCCTCCAACTCTTCTGCATCCAACAAAGGAGCAGTTGCAGTTAGACAGCCTTATATTAGGGTTGTAGGAATAGAAGATGGAAATGAAGCCAAGTCTCGAGGTCCCACTGCGTTTACAAATGAAGAAATTGAAGAGTTCAAAAAATTTGCAGCTGATCATGATGTATACAAAAATATATGCTCCAAGATTGCTCCGTCTATATTTGGGCATGATGACGTCAAAAAGGCTATGGCTTGTCTTTTATTTGGAGGGTCAAGAAAGCATTTGCCAGATGGGGTGAGATTAAGAGGTGATATCAATGTGTTACTTCTCGGGGATCCTTCTACAGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACTGCTCCTATTGCTGTTTATACTTCTGGAAAAGGATCATCAGCTGCTGGCCTCACAGCTTCCGTAATCCAAGATAGCAGCACTCGCGAGTTTTATCTTGAAGGTGGAGCCATGGTCTTGGCAGATGGAGGTGTTGTCTGCATTGATGAGTTTGATAAGATGAGACCAGAAGATAGGGTTGCCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACCGTTCTTAATTCAAGGACTTCTGTTCTTGCTGCGGCCAATCCCCCATCTGGGCGTTATGATGACCTTAAGACTGCACAGGACAATATTGATTTACAGACAACTATTCTTTCTAGGTTTGATTTAATCTTCATAGTGAAAGACATCAGAATGTACGAACAAGATAAGATAATAGCTAGTCATATCATAAAGGTTCATTCATCAGCTAGTGCAACGAGGGGTGAGAATAGGACTCCCGTTTCCAAGGAAGAAAATTGGCTGAAGAGGTACTTGCAATATTGTCGAACTGAATGCCACCCTCGTCTATCGGAAGCTGCAGCAACAAGGCTGCAAAATAATTATGTGAATATCAGACAGGATATGAGGCGGCAAGCAAATGAAACTGGAGAAGCGGCTGCAATACCAATTACTGTAAGACAGCTGGAAGCTATTGTTAGGTTGAGTGAGTCACTTGCAAAGATGAAACTATCTAATCATGCTACGGAGGACAATGTGCAAGAAGCCATAAGGCTTTTCACCGTGTCTACAATGGATGCAGCTAAGTCGGGAATAAACCAACAGATAAATCTCTCACCTGAAATGGCCCGTGAGATACAGCAAGCAGAAGTTCAGATAAAGAGAAGAATCGGGATTGGGAACCACATATCAGAAAGAAGACTGATTGATGATCTCGGCAGAATGGGGATGAATGAATCTATTGTAAGAAGAGCCCTTCTAATCATGCACCAGAGAGACGAAGTAGAGTACAAGCGAGAAAGGCGTGTTGTATTTCGGAAAGCCTAA 2202 0.4369 MSGWDEGGVYYSDQAHSWDDGRGGETDAAISNHTILQKFKEFIRNFETGNNVFPYRESLLHNPKYLLVDMEDLDSFDPDLPSKLRSAPADILPLFETAAAQVLVSLKTKVAGDTGDMEDAAPGDVQILLTSKEDSVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAVVPRSCDHVPQPGEEPCPIDPWLIVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIVGIYSIFQASNSSASNKGAVAVRQPYIRVVGIEDGNEAKSRGPTAFTNEEIEEFKKFAADHDVYKNICSKIAPSIFGHDDVKKAMACLLFGGSRKHLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYEQDKIIASHIIKVHSSASATRGENRTPVSKEENWLKRYLQYCRTECHPRLSEAAATRLQNNYVNIRQDMRRQANETGEAAAIPITVRQLEAIVRLSESLAKMKLSNHATEDNVQEAIRLFTVSTMDAAKSGINQQINLSPEMAREIQQAEVQIKRRIGIGNHISERRLIDDLGRMGMNESIVRRALLIMHQRDEVEYKRERRVVFRKA* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4244 733 Pfam MCM N-terminal domain 37 108 IPR027925 -
Mtr4g4244 733 Coils Coil 580 600 - -
Mtr4g4244 733 Gene3D - 165 223 - -
Mtr4g4244 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 649 IPR027417 -
Mtr4g4244 733 Pfam MCM OB domain 138 273 IPR033762 -
Mtr4g4244 733 ProSitePatterns MCM family signature. 438 446 IPR018525 GO:0003677|GO:0005524|GO:0006260
Mtr4g4244 733 Gene3D - 30 116 - -
Mtr4g4244 733 ProSiteProfiles MCM family domain profile. 329 535 IPR001208 GO:0003677|GO:0005524|GO:0032508
Mtr4g4244 733 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 139 154 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Mtr4g4244 733 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 165 177 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Mtr4g4244 733 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 289 301 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Mtr4g4244 733 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 567 582 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Mtr4g4244 733 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 643 660 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Mtr4g4244 733 Gene3D - 310 669 IPR027417 -
Mtr4g4244 733 Pfam MCM AAA-lid domain 559 648 IPR041562 -
Mtr4g4244 733 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 59 677 IPR031327 GO:0003677|GO:0005524|GO:0032508
Mtr4g4244 733 CDD MCM5 332 648 - -
Mtr4g4244 733 SUPERFAMILY Nucleic acid-binding proteins 38 295 IPR012340 -
Mtr4g4244 733 Pfam MCM P-loop domain 317 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Mtr4g4244 733 SMART mcm 134 650 IPR031327 GO:0003677|GO:0005524|GO:0032508
Mtr4g4244 733 Gene3D - 138 273 IPR012340 -
Mtr4g4244 733 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 59 677 - -
Mtr4g4244 733 PRINTS Mini-chromosome maintenance (MCM) protein family signature 370 385 IPR001208 GO:0003677|GO:0005524|GO:0032508
Mtr4g4244 733 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 444 IPR001208 GO:0003677|GO:0005524|GO:0032508
Mtr4g4244 733 PRINTS Mini-chromosome maintenance (MCM) protein family signature 458 471 IPR001208 GO:0003677|GO:0005524|GO:0032508
Mtr4g4244 733 PRINTS Mini-chromosome maintenance (MCM) protein family signature 482 494 IPR001208 GO:0003677|GO:0005524|GO:0032508
Mtr4g4244 733 PRINTS Mini-chromosome maintenance (MCM) protein family signature 509 517 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4244 Mtr-Chr4 56529769 56535813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4244 1 733 Core DNA Replication Machinery Family AT2G07690 78.172 0.0 1177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4244 K02209 - gmx:100779483 1288.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4244 4 56529769 56535813 Mtr4g4244 4 56529769 56535813 ECH