Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4243 ATGCCGTACGGTGAATCCTCCACCGCTGCTTCCGTTCAGTTTCCGCCGGAGACCTCCGATCATGGAAAAACTCCTTCCCTTGACGTTGAGTCTTCTCTAGTCAAAAAAGATCCCACCAAAATTGCTAGAAAGTATCAATTGGATTTATGCAAAAAAGCTATGGAGGAAAATACTATTGTTTATTTGGGAACAGGATGTGGGAAGACACACATTGCTGTGTTGCTCATGCATGAGATGAGACATTTGATTAAGAAGCCGAACAAGGATGTATGCGTCTTTCTTGCACCTACCGTTGCTCTAGTTCATCAGCAAGCAAAGGTGATATCTGACTCTACTGATTTTGAAGTTGGAACTTACTGTGGGAGTTCCAAGGGGACAAAATCTCATCAACACTGGGAGGAGGAGATTGAACAGAACGAGGTTCTTGTCATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATCAAGATGGAGATGATCACACTTTTGATTTTCGATGAATGCCATCATGCTCAAGTCAAAAGCAGTCATCCTTATGCAGAAATCATGAAAGTCTTCTACAAAAATAATTCCACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCCGTTGTAGGAAAAGGAGCTTCTACTGAAGCAAATCTACCAAAAAGCATTAATAGTCTTGAACAAATGCTTGATGCTAAGGTATACTCAGTTGACGATGAGGCATTGCAATCTTTTGTGACCAGTCCTGCAGTTCGTATATATCGTTATAGTTCGACTGCAAGTATGGAAACTAGCTTGTACTGTAAAATTGAGGAGATTAAATGCCAGTGCATAGAAACCCTTGGTAGGAGTATAGAAGATCACCAGAAGCGGATGAGCACAAAGAAACTTCTCAACCGGGTGCATGAGAATGTGGTCTTTTCTCTTAGAAGTCTTGGCATTTGGGGAGCATTGCAGGCTACCCGTATTCTTTTGAGCGGTGATCATTCTGAGAGGCATGCATTAGTTGGGGCAGAAGGAATTTCAAGTGATGAGTCTGTATGTGATAAATATCTTGCAAAGGCTGCTGACCTATTTGCTTCCAAATCTATGACAGGTGACAGCTTATCTGATCCATCTTCCCTGGAAATATTAAAAGAGCCCTGTTTCTCTGCAAAGCTACTACGCCTCATTGGGATACTGACCAGTTTCAGGTTGCAGCAGAACATGAAGTGTATAGTTTTTGTCAACAGAATTGTGACTGCAAGATCTCTGTCTTACATACTACAGAAGCTCGAGCTTCTAAGGCAATGGAAGAGTGGTTTTCTTGTAGGAGTCCATTCTGGAGCAAAGATTATGTCACGGAAGACCATGAGTGCAATTGTTGAGAAGTTTCGCTCTGGAGAGCTGAATTTATTGGTTGCCACCAGTGTGGGGGAAGAAGGACTTGATATTCAGACATGTTGCCTTGTCATACGGTTCGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGTCGTGCACGCATGCCTCGTTCAGAATATGCATTTTTGGTTGACAGTGGAAATGAGAAGGAATTAGCCATTATTGATGGTTTTGAGAAAGATGAGTCCCGAATGAATACGGAAATTACTGACAGAACATCCAGTGAGACATACAACATCCCTGTACAAAAAACATTCAGAGTTGATTCATCTGGTGCCTCAGTCAGTTCGGCATATAGTATCTCATTGCTCTACCAGTATTGTTCAAAGCTTCCGCATGATGAGTTCTTTGATCCGCGGCCAAATTTCTTTTACTTTGATGATTTAGGAGGGACTGTCTGCCAAATAACTTTGCCTTCCAATGCTCCTATACACCAAATTGTCGGTACACCACAATTGTCTATGGAAGATGCGAAAAGAGATGCTTGCCTGAAAGCAATTGAAGAACTGCATAAATTAGGTGCTTTGAATGATTGTCTTTTGCCAAGGCAAAATGATGCAGAGCCGGAAAAGGTTTTGGGTTCTTCTGATTCAGATGAATATGCAGATGACATTTCAAGAGGAGAATTATATGAGATGCGAGTTCCTTCTGTCTTTGGACAGTCATGGAAAAATGAGAAAACTGTCCGTCTCAACTCTTACTACATTAAATTTTCCCCCACTCCAGAGGATAGGGTCTATAAAAATTTCGGTTTATTCATCATGACTCGTCTTCCAATGGAGGCAGAGCAACTGGAACTTGATCTTCATCTTGCTCACGGTAGATCCGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTCAACAAAGATGAGATTAAGATGGCGGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTCGATAGATTAGAATTTGTTTCGAAGTTTGTAGAATTGGGTGCTAAATCTCACACAAGCGCATCGACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATACGATGATGTGATGAAAGTAGACTGGAAAACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGAAGTTACTTCAGATAAAATGGTTACATCTATGGATAATCACCTGCTACTTGCCAATGGTTACAAAAGTATTACAGATGTTGAGAATAGTTTAGTGTATGTTCCACATACCAAGTTCTTTTTTTTTGTCACAAATATTATCTATGAAAAGAATGGATTCAGTCCTCATAAAAATTCAGAAACTTCAAGCTTCGTGGACCACTTAAATGAAAAGTTTTCCATTAATCTCAAACGCCCTGAACAACCACTTCTGCATGCAAAACAACTCTTCAATTTGCACAACCTACTACACGATCGAAAGAATGCGGATGATGAAGTCACAGAACCACATGAGCTGGAGGAACACTTTGTTTATTTTCCTCCTGAGCTATGCGAACTGAAAATAGTAGGCTTTTCAAAGGATATTGGCAGTTCCATATCTTTGCTACCTTCAATTATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAGGAACCAGCTATCTTCCTCCTTCCCAGAGGCAGCTGAAATTAGTGCCCATAGGGTTCTAGAGGCTCTCACCACCGAGCAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTCGGTGACGCTTTCCTTAAATTTTCTGTCGCACGCCATTTTTTTCTGTTGCACGACAGCTTTCATGAAGGAGACCTTACCAGCAAGCGTTCCAATATTGTAAATAATTCCAATTTGCTCAAGTTGGCTGTTAAGCGCAATTTGCAGGTCTATATACGTGACCAGGCACTTGATCCCATCCAGTTCTATGCATTAGGCCGTCCTTGCCCAAGAGTTTGTACCAAGGAAACTGAAGACAGCATCCACTTGTGTTTAAATTCTGGTGAGGAGAAAAGGAGTGCAACTCAAATCCGTTGTAATAAACATCACCATTGGTTGCATAGGAAAACAATTTCTGATGTGGTTGAAGCTCTTGTGGGAGCATTCATAGTCGACAGTGGATTTAAAGCTGCAATTGCCTTTCTTACATGGATTGGCATGCAAGTAAATTTTGAAGCCTCGCAAGTTGTTAATATTTGCACTGGAAGTGTTGGCTATTTTCCTCTTTCTAGTGAAGTAGACATTCCCTCCCTTGAAGGAAAGTTAGGGCATCACTTTGTTCATAAGGGCCTACTTCTTCAGGCATTTGTACATCCTTCGTATAATAAGCATGGAGGAGGCTGTTATCAGAGACTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACGTCATATCTATACTCAGCTTATCCCAAACTAAAGCCTGGCCAACTGACAGATCTGAGATCGTTGTCTGTCAATAATAAGGCATTTGCCTGTGTGGCAGTAGATCGCTGTTTTCATGAATTTCTTCTATGCGATTCAAGTGCTCTGACTGGGGCAATAAAAAAGTATGCGGACTATATTAGAAGACCTGCATCAGACCGTGACAAAAATGGAGGACCAAATTGTCCTAAGGCCCTAGGTGATTTGGTGGAATCTTGTATTGGTGCCGTTCTTCTTGATTCAGGATTTGATTTGAACAAAGTTTGGAAGATTATGACATCGTTCTTGGACCCAATCATGAAATTTTCATCAAGTTTACAGCTTAGTCCTGTTAGGGATTTGCAAGAACTTTGCCAATCTCATAATTTGGAATTGGAGCTTCTGACATCAAAACTAGCTAAAACTTTTTCAGTTGAAGCTAAAGTGACTGGGGACGGTGTATATGAAGAAGTTTCTGTGACCAGCCAAAATAAAAAAGAAGCTGCTAAAGTTGCTTCACAACTACTATTTTCAAAGTTGAAGGCTCAAGGCTTGAAACTGAGGACAAAAACTTTGGAAGACGTTTTGAAATCAACGTCTAAGACGGAACCAAAACTGATTGGCTTTGATGAAACTCCCATTGATGTAAAAGATACTACTATCATCGAACAAGTAATAGTTAATGGAGACCTATGCAACAAGTCTAATGCAGAAATCTGCCCTATTCAAGATGTATCAGATGCATCCCCCTCGTGTGTTATACGTGTCGTCGCTCAACGGCTTCAATCTTCTTCCAAGGGAAAGCTTAGTGAAACCGTTCAAAATCGTGATTGTGGCAGTGACTTAGCAAGGACAGCAAGATCGCGATTGTATGAATTATGTGCTGCTAATTACTGGAAACCTCCTTCATTTGACTGCTGCAAGGAAGAGGGACCAGACCACCTTAAGTTATTCACTTGCATGGTGACAATGGAGATAGAAGAGGCCTCAAATATGATTATCGAGTTTATTGGGGAACCTCTACCAAAGAAGAAAGATTCAGCGGATAGTGCAGCTGAGGCTGCATTTTGGTACCTGAAAGAGAAAGGTTACCTGCATAATGCTAACTGA 4878 0.4096 MPYGESSTAASVQFPPETSDHGKTPSLDVESSLVKKDPTKIARKYQLDLCKKAMEENTIVYLGTGCGKTHIAVLLMHEMRHLIKKPNKDVCVFLAPTVALVHQQAKVISDSTDFEVGTYCGSSKGTKSHQHWEEEIEQNEVLVMTPQILLHNLSHCFIKMEMITLLIFDECHHAQVKSSHPYAEIMKVFYKNNSTKVPRIFGMTASPVVGKGASTEANLPKSINSLEQMLDAKVYSVDDEALQSFVTSPAVRIYRYSSTASMETSLYCKIEEIKCQCIETLGRSIEDHQKRMSTKKLLNRVHENVVFSLRSLGIWGALQATRILLSGDHSERHALVGAEGISSDESVCDKYLAKAADLFASKSMTGDSLSDPSSLEILKEPCFSAKLLRLIGILTSFRLQQNMKCIVFVNRIVTARSLSYILQKLELLRQWKSGFLVGVHSGAKIMSRKTMSAIVEKFRSGELNLLVATSVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELAIIDGFEKDESRMNTEITDRTSSETYNIPVQKTFRVDSSGASVSSAYSISLLYQYCSKLPHDEFFDPRPNFFYFDDLGGTVCQITLPSNAPIHQIVGTPQLSMEDAKRDACLKAIEELHKLGALNDCLLPRQNDAEPEKVLGSSDSDEYADDISRGELYEMRVPSVFGQSWKNEKTVRLNSYYIKFSPTPEDRVYKNFGLFIMTRLPMEAEQLELDLHLAHGRSVMTKFIPFGVVEFNKDEIKMAENFQEMFLKIILDRLEFVSKFVELGAKSHTSASTFYLLLPVILKEYDDVMKVDWKTVKRCLCSPIFRHPEVTSDKMVTSMDNHLLLANGYKSITDVENSLVYVPHTKFFFFVTNIIYEKNGFSPHKNSETSSFVDHLNEKFSINLKRPEQPLLHAKQLFNLHNLLHDRKNADDEVTEPHELEEHFVYFPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELRNQLSSSFPEAAEISAHRVLEALTTEQCQERFSLERLEVLGDAFLKFSVARHFFLLHDSFHEGDLTSKRSNIVNNSNLLKLAVKRNLQVYIRDQALDPIQFYALGRPCPRVCTKETEDSIHLCLNSGEEKRSATQIRCNKHHHWLHRKTISDVVEALVGAFIVDSGFKAAIAFLTWIGMQVNFEASQVVNICTGSVGYFPLSSEVDIPSLEGKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRCFHEFLLCDSSALTGAIKKYADYIRRPASDRDKNGGPNCPKALGDLVESCIGAVLLDSGFDLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQSHNLELELLTSKLAKTFSVEAKVTGDGVYEEVSVTSQNKKEAAKVASQLLFSKLKAQGLKLRTKTLEDVLKSTSKTEPKLIGFDETPIDVKDTTIIEQVIVNGDLCNKSNAEICPIQDVSDASPSCVIRVVAQRLQSSSKGKLSETVQNRDCGSDLARTARSRLYELCAANYWKPPSFDCCKEEGPDHLKLFTCMVTMEIEEASNMIIEFIGEPLPKKKDSADSAAEAAFWYLKEKGYLHNAN* 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4243 1625 CDD RIBOc 1217 1367 IPR000999 GO:0004525|GO:0006396
Mtr4g4243 1625 Pfam PAZ domain 862 985 IPR003100 GO:0005515
Mtr4g4243 1625 ProSitePatterns Ribonuclease III family signature. 1236 1244 IPR000999 GO:0004525|GO:0006396
Mtr4g4243 1625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 543 IPR001650 -
Mtr4g4243 1625 CDD RIBOc 1014 1170 IPR000999 GO:0004525|GO:0006396
Mtr4g4243 1625 Gene3D - 1365 1445 - -
Mtr4g4243 1625 SMART riboneu5 1216 1368 IPR000999 GO:0004525|GO:0006396
Mtr4g4243 1625 SMART riboneu5 1011 1180 IPR000999 GO:0004525|GO:0006396
Mtr4g4243 1625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 521 IPR027417 -
Mtr4g4243 1625 SMART PAZ_2_a_3 837 990 IPR003100 GO:0005515
Mtr4g4243 1625 Gene3D Dicer dimerisation domain 566 661 IPR038248 -
Mtr4g4243 1625 SMART ultradead3 38 240 IPR014001 -
Mtr4g4243 1625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 225 IPR014001 -
Mtr4g4243 1625 Gene3D - 42 297 IPR027417 -
Mtr4g4243 1625 SMART DRBM_3 1373 1437 IPR014720 -
Mtr4g4243 1625 SMART DRBM_3 1542 1616 IPR014720 -
Mtr4g4243 1625 Gene3D paz domain 857 962 - -
Mtr4g4243 1625 Gene3D Ribonuclease III domain 1005 1172 IPR036389 GO:0004525|GO:0006396
Mtr4g4243 1625 Gene3D Ribonuclease III domain 1196 1364 IPR036389 GO:0004525|GO:0006396
Mtr4g4243 1625 Coils Coil 1374 1394 - -
Mtr4g4243 1625 ProSiteProfiles Ribonuclease III family domain profile. 978 1160 IPR000999 GO:0004525|GO:0006396
Mtr4g4243 1625 MobiDBLite consensus disorder prediction 1 31 - -
Mtr4g4243 1625 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1541 1616 - -
Mtr4g4243 1625 ProSiteProfiles Ribonuclease III family domain profile. 1201 1345 IPR000999 GO:0004525|GO:0006396
Mtr4g4243 1625 Pfam Dicer dimerisation domain 570 655 - -
Mtr4g4243 1625 SUPERFAMILY RNase III domain-like 1200 1364 IPR036389 GO:0004525|GO:0006396
Mtr4g4243 1625 Gene3D - 379 541 IPR027417 -
Mtr4g4243 1625 SUPERFAMILY dsRNA-binding domain-like 1541 1619 - -
Mtr4g4243 1625 PANTHER DICER-RELATED 38 1619 - -
Mtr4g4243 1625 SUPERFAMILY RNase III domain-like 1011 1174 IPR036389 GO:0004525|GO:0006396
Mtr4g4243 1625 MobiDBLite consensus disorder prediction 1 20 - -
Mtr4g4243 1625 Pfam Ribonuclease III domain 1236 1345 IPR000999 GO:0004525|GO:0006396
Mtr4g4243 1625 Pfam Ribonuclease III domain 1029 1160 IPR000999 GO:0004525|GO:0006396
Mtr4g4243 1625 SUPERFAMILY PAZ domain 863 962 IPR036085 GO:0005515
Mtr4g4243 1625 Gene3D - 1548 1617 - -
Mtr4g4243 1625 ProSiteProfiles PAZ domain profile. 891 964 IPR003100 GO:0005515
Mtr4g4243 1625 Pfam Helicase conserved C-terminal domain 392 504 IPR001650 -
Mtr4g4243 1625 SMART helicmild6 423 506 IPR001650 -
Mtr4g4243 1625 Pfam Type III restriction enzyme, res subunit 52 207 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mtr4g4243 1625 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 570 660 IPR005034 GO:0016891
Mtr4g4243 1625 CDD DEXHc_dicer 40 239 - -
Mtr4g4243 1625 PANTHER DICER-LIKE PROTEIN 4 38 1619 - -
Mtr4g4243 1625 SUPERFAMILY dsRNA-binding domain-like 1327 1437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4243 Mtr-Chr4 56512100 56527602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4243 404 536 Eukaryotic Initiation Factors Gene Family AT3G19760 31.884 2.64e-07 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4243 4 56512100 56527602 Mtr4g4243 4 56512100 56527602 ECH