Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4233 ATGGCTTTTCACGAGCATCTTCAACAAGAAATAGCTTTCCAGCGTTTCACAGAAGAGGAAGATGAAGAAAGAGCATCGTGGCTCAACAACAACAACAACAACGCACGTCAACAGAATTTCATGCAAATGGAACCAGAAAGAAGGGAAAAAAGCATGGATCGGAACCACCGGAATGACAACAATTGCGAAACGGAAGAATTAAGAGAATACAAAGCAGAGATACTAGGACATCCACTCTATGATCAATTATTATCTGCTCATGTTTCTTGTCTCAGAATTGCAACACCGGTTGATCAGCTTCCAAGGATTGATGCTCAGCTTCAACAGGCACAACGTGTTCTTCAAAAATATTCTTCTGTTGGAATTGGAAATATGGATCCCAAGGAGCTTGATCACTTTATGACACATTATGTTCTTTTGCTGTGTGCCTTCAAAGAACAGTTGCAACAACATGTCCGTGTTCATGCCATGGAGGCAGTAATGGCTTGTTGGGATCTTGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTTCGGGTGAAGGAACAGGAGCAACAATGTCAGACGATGAAGACGAGCAGGCAGAGAGTAACGCTAGGTTATACAACGAAGGAAGTAGCCTTGACGGTGTTGATACCCTTGGCTTTGGTCCTCTTGTCCCCACAGAGACTGAAAGGTCTTTGATGGAACGAGTTAGGCTTGAGTTGAAGCATGAGCTGAAACAAGGTTACAAGGAGAAGATTGTAGATGTAAGAGAAGAAATTCTACGAAAGAGAAGAGCTGGGAAACTCCCTGGGGACACCACATCTCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTATCCAACTGAGGAAGATAAGGCTAGATTGGTGCAAGAAACAGGCTTGCAATTAAAGCAAATAAATAACTGGTTTATTAATCAAAGGAAAAGGAACTGGCATGCTAACTCCCCATCCTCTAGTAGCTCCAAAACCAAGCGCAAGAGTGCAGGCGATAGCAGTAACCAAAGCTTCATGTGA 1026 0.4327 MAFHEHLQQEIAFQRFTEEEDEERASWLNNNNNNARQQNFMQMEPERREKSMDRNHRNDNNCETEELREYKAEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQAQRVLQKYSSVGIGNMDPKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSSGEGTGATMSDDEDEQAESNARLYNEGSSLDGVDTLGFGPLVPTETERSLMERVRLELKHELKQGYKEKIVDVREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANSPSSSSSKTKRKSAGDSSNQSFM* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4233 341 Pfam ELK domain 234 255 IPR005539 GO:0003677
Mtr4g4233 341 SMART ELK_2 234 255 IPR005539 GO:0003677
Mtr4g4233 341 SMART KNOX1_2 68 112 IPR005540 GO:0003677|GO:0005634
Mtr4g4233 341 Gene3D - 253 332 - -
Mtr4g4233 341 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 17 335 - -
Mtr4g4233 341 Pfam KNOX1 domain 70 110 IPR005540 GO:0003677|GO:0005634
Mtr4g4233 341 SUPERFAMILY Homeodomain-like 256 321 IPR009057 -
Mtr4g4233 341 MobiDBLite consensus disorder prediction 175 196 - -
Mtr4g4233 341 SMART HOX_1 256 321 IPR001356 GO:0003677
Mtr4g4233 341 Pfam KNOX2 domain 127 174 IPR005541 GO:0003677|GO:0005634
Mtr4g4233 341 Pfam Homeobox KN domain 274 313 IPR008422 GO:0003677|GO:0006355
Mtr4g4233 341 ProSiteProfiles 'Homeobox' domain profile. 254 317 IPR001356 GO:0003677
Mtr4g4233 341 SMART KNOX2_2 119 175 IPR005541 GO:0003677|GO:0005634
Mtr4g4233 341 ProSiteProfiles ELK domain profile. 234 254 IPR005539 GO:0003677
Mtr4g4233 341 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 17 335 - -
Mtr4g4233 341 MobiDBLite consensus disorder prediction 314 341 - -
Mtr4g4233 341 CDD homeodomain 257 316 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4233 Mtr-Chr4 56401501 56406992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4233 70 338 Homeobox Transcription Factor Family AT5G11060 80.292 3.70e-159 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mtr4g4233 KNOX2 4.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4233 - - gmx:100781997 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4233 4 56401501 56406992 Mtr4g4233 4 56401501 56406992 ECH