Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4232 ATGGCATCTTGCTTGAAACCACAAAGCAGCAATGAAGATGATTCTGTCATACTCTTTTCAACTTCTAATTCTTCCATTAGTCCTTCTTCCTCTTCTTTCCATCATTCACCACCACCAACTTCATACAAACTTTCTATTAATAACCTCACCTATACTTTGCACCCTTATAAAACCATTCCCTTTTCATTTAAAAGCCTTACTCAAAAACCACATCCTGTAAACATACTCAAATCTGTTTCTTTTGTTGCCAGAACTTCCGAAATTGTCGCAGTTGTCGGACCTAGTGGCACAGGCAAATCCACCCTTCTTAGAATAATCGCGGGGCGAATAAAAGACAAAGATTTCAACCCCAAAACTATCTCAATCAATGATCACCCTATGAGTACTCCATCTCAGTTAAGAAAAATATGTGGCTTTGTTTCACAAGAAGACAACTTGCTTCCACTTCTAACAGTGAAAGAAACTTTGCTATTTGGTGCAAAGTTTAGGCTAAAAGAAATGACACCAAAAGAAAGAGAATTAAGAGTAGAAAACTTAATGCAAGAGTTAGGACTTTTTCATGTAGCACATAGTTTTGTTGGTGATGATGAAAATAGAGGTGTCTCTGGTGGTGAAAGAAAAAGGGTATCAATTGGTGTTGATATGATTCACAATCCACCAATTTTAGTCTTGGATGAACCAACATCAGGACTTGATAGTACCTCAGCTCTTCATGTTATTGAGCTTCTTTCTTCAATGGTTAAATCAAAGCAAAGGATAGTGATACTTTCAATTCATCAACCTAGCTATAGAATATTGCAATATATTTCTAAGTTCTTGATCCTTTCTCATGGTTCAGTAGTTCATAATGGTAGTTTGGAATCACTAGAGGAAAGAATATCTAATTTGGGATTTCAAATTCCATTGCAACTTAATGCCCTTGAATTTTCAATGGAAATTATACAAAGTTTAGAAGATAATTCTAGTAGTTTCATCGTCCACGAAAACGAAACTTCTTTTCCAAGTTCCATGTGGGCGCCAGAGGAAGAAAACATTGGAAGCGACGTTTTCCAATCACAATATGAAAAGGAAAATTTTGGACATCTTTGTTATGTAAACATGATGGAGATACTATTTTTGTGTTCAAGATTTTGGAAGATTATTTATAGAACAAAGCAACTTTTTTTAGCTAGAACAATGCAAGCATTAGTTGGTGGATTTGGTTTAGCAAGTGTTTATATAAAGGTAAGAAAAGATGAAGACGGAATTGCAGAAAGGTTAGGTCTGTTTGCATTTAGTCTCAGTTTTCTCTTGTCTTCAACAGTTGAAGCACTTCCAATATATCTTCAAGAGAGAACTGTTCTAATGAAAGAAGCATCAAGAGGAGCTTACAGAATTTCTTCTTACTTGATAGCCAACACTTTTGTTTTTCTTCCTTTTTTGTTTGTAGTATCTTTACTTTTTGCAGTTCCTGTTTATTGGATTGTTGGACTCAATCCTTCACTCACTGCCTTCACTTTCTTCACTTTTGTTGTTTGGCTCATTGTGCTGATGGCAAGTTCTTTAGTTCTCTTTTTGAGTTCTGTGTCTCCTGATTTCATTTCAGGAAATTCACTCATATGCACAGTTCTTGGAGCCTTTTTTCTATTCTCTGGATACTTCATTCCAAAAGAGAGTATTCCAAAATATTGGCTTTTTATGTATTATGTGTCACTTTATAGGTACCCTTTGGATGCATTACTCACAAATGAGTATTGGAATGTTGGAAATGAGTGTTTCTCACAAGGCTCTTCTTCAATGTGTTTGGTTACTGGATTTGATGTCTTGAAGAGTAGAGGAATTGAAAAGGATAATAGGTGGATGAATGTGGGGATAATGTTTGGATTCTTTGTGTTCTATCGTTTGCTTTGTTGGGTCATACTTGCTAGAAAGGCCTCCAAGACTACAATATAA 1932 0.3551 MASCLKPQSSNEDDSVILFSTSNSSISPSSSSFHHSPPPTSYKLSINNLTYTLHPYKTIPFSFKSLTQKPHPVNILKSVSFVARTSEIVAVVGPSGTGKSTLLRIIAGRIKDKDFNPKTISINDHPMSTPSQLRKICGFVSQEDNLLPLLTVKETLLFGAKFRLKEMTPKERELRVENLMQELGLFHVAHSFVGDDENRGVSGGERKRVSIGVDMIHNPPILVLDEPTSGLDSTSALHVIELLSSMVKSKQRIVILSIHQPSYRILQYISKFLILSHGSVVHNGSLESLEERISNLGFQIPLQLNALEFSMEIIQSLEDNSSSFIVHENETSFPSSMWAPEEENIGSDVFQSQYEKENFGHLCYVNMMEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGLASVYIKVRKDEDGIAERLGLFAFSLSFLLSSTVEALPIYLQERTVLMKEASRGAYRISSYLIANTFVFLPFLFVVSLLFAVPVYWIVGLNPSLTAFTFFTFVVWLIVLMASSLVLFLSSVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFMYYVSLYRYPLDALLTNEYWNVGNECFSQGSSSMCLVTGFDVLKSRGIEKDNRWMNVGIMFGFFVFYRLLCWVILARKASKTTI* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4232 643 Pfam ABC-2 type transporter 370 578 IPR013525 GO:0016020|GO:0140359
Mtr4g4232 643 Gene3D - 61 310 IPR027417 -
Mtr4g4232 643 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 636 - -
Mtr4g4232 643 SMART AAA_5 85 287 IPR003593 -
Mtr4g4232 643 ProSitePatterns ABC transporters family signature. 201 215 IPR017871 GO:0005524
Mtr4g4232 643 Pfam ABC-2 type transporter 259 336 IPR043926 GO:0140359
Mtr4g4232 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 295 IPR027417 -
Mtr4g4232 643 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 61 302 IPR003439 GO:0005524
Mtr4g4232 643 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 1 636 - -
Mtr4g4232 643 Pfam ABC transporter 76 229 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4232 Mtr-Chr4 56398902 56401324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4232 57 311 Calmodulin-binding Proteins AT2G36910 29.963 1.28e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4232 K05681 - gmx:100783883 996.497