Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4225 ATGGGTTCCACCTCTAGTCGACTTGGTTCTCGCTCTTCTTCTTCTTCTACTCAAAGGGTCAACAACAACCATCGCTTCAGATTCTCTTCCTTTCTCTGTGGTGCTTCCACCTCTCGCTCCATTTCTCAGATGGAAGGACATCAATATGAAGAACTTCAGGTTGATCCAGCTAGAGATTTTGATGATGAAATTCAGAAACTCGCTGATGAGTCGACATTATCAGGTGCAGAAGAAGCTAGATTTAGGTTTTGTGCTCAAGCTGAAAGTTCAACCTCGACCGATACGGGAACTGGGTTCCGTGAGAATGCTACTGTTGAAGGTTCTTTTGGAAATGTTGCTACAAGTAGTCAGAGGAACTGCTTGTCTGAACAAAAGGAGCTAGTCCCTCCTTATCAGGTAAGTTCTGGTCATAGCCATCCTGAATCATATAGTGATAGCAACAACGCAGCTAGTACTTCATTTGTTGAACAGAAATCTTCAGATCCAGTCTCTCTCTCTGTTAATGATTCTGCTAACAAGGATAGAATCAATAATGTTGATGATCCAGTGCTTAGTGGCGTCTCTCGAATATCTCATGAGACCGTGCGTCCAAGGAGCCCAATCTCTCAAGAGTACGGAAATTCAAGTTCTGGTGAAATTTCTGTTGAGATCAACACAGATGCTGGCATATCTATCCATAGTTCTTCCATTCCTGTTTCTCAAGCTTCTAATACTCTACCAGCTTCTCAAGTGCCAGAAGATGGAGCTCGTCACGAAACATTACCTTCAGGTTTAGGTATTCTTGTGTCCAACCGGGAAATAGTACATGGAAATGATGGTCTGTTTCAAGTTGATGTGGTCGCAATATCTTCCAACATTTTGTCTGGCAGCAATGGAGATGCCGATGATCATGACGCCAGAAGGAATAGTAGAAGATTATTTTGGGATGCTTTTTCACAACGCAGTTCTAGAAGGCTTGGTGATTCTCCAACCATCGTTTTCTCTTCTGGAGGCACTGATGATTTGGGATCTCATGATCGGTGGCATGTTGATTTTGATGAGGATTTATCAAATTATGGTGTTGGGGGTGCGTCTGGACATAGGGGCAGCAGAATTCACAGATTGAATGAAAGAGTGCGAAACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCCTTGATGAGATTGGTCGGTTGAACACTTCATGTCCATTAGGACTCCATGCAGACGGTATGTGCTCGTGCGAGTCATTCCCAATGGCTGAGGAATCTAGCACTCGATCAAGTATTTCAAGAATAGTCATGCTGGCTGAAGCTCTTTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGATCCCAGTCCCTATCCACCTCACTCCCTGCACCTGAATCAGTCGTGGACTCTTTCCCTCTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGGAGGCAATGATGCTGAACAATGTTACATATGCCTGGCGGAGTATGAAGATGGGGACCAAATACGAGTTCTTCCTTGCAAGCACGAATATCACATGTCGTGTGTCGATAAGTGGCTGAAGGAAATACACGGTGTATGTCCTCTGTGTCGCAGCAATGTTTGTGGAGGGTTAACAGAGTTGTCAACTGACTCAGAAGTGCAGTCTCGGTGA 1638 0.4457 MGSTSSRLGSRSSSSSTQRVNNNHRFRFSSFLCGASTSRSISQMEGHQYEELQVDPARDFDDEIQKLADESTLSGAEEARFRFCAQAESSTSTDTGTGFRENATVEGSFGNVATSSQRNCLSEQKELVPPYQVSSGHSHPESYSDSNNAASTSFVEQKSSDPVSLSVNDSANKDRINNVDDPVLSGVSRISHETVRPRSPISQEYGNSSSGEISVEINTDAGISIHSSSIPVSQASNTLPASQVPEDGARHETLPSGLGILVSNREIVHGNDGLFQVDVVAISSNILSGSNGDADDHDARRNSRRLFWDAFSQRSSRRLGDSPTIVFSSGGTDDLGSHDRWHVDFDEDLSNYGVGGASGHRGSRIHRLNERVRNSRSEIWERLRGGLDEIGRLNTSCPLGLHADGMCSCESFPMAEESSTRSSISRIVMLAEALFEVLDEIHRQPGSQSLSTSLPAPESVVDSFPLKSHKKVDAADGGNDAEQCYICLAEYEDGDQIRVLPCKHEYHMSCVDKWLKEIHGVCPLCRSNVCGGLTELSTDSEVQSR* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4225 545 MobiDBLite consensus disorder prediction 128 182 - -
Mtr4g4225 545 ProSiteProfiles Zinc finger RING-type profile. 484 526 IPR001841 -
Mtr4g4225 545 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 543 - -
Mtr4g4225 545 MobiDBLite consensus disorder prediction 1 21 - -
Mtr4g4225 545 Pfam Ring finger domain 483 526 IPR001841 -
Mtr4g4225 545 SMART ring_2 484 525 IPR001841 -
Mtr4g4225 545 CDD mRING-H2-C3H2C2D_ZSWM2 483 526 - -
Mtr4g4225 545 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 543 - -
Mtr4g4225 545 MobiDBLite consensus disorder prediction 128 173 - -
Mtr4g4225 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 530 IPR013083 -
Mtr4g4225 545 SUPERFAMILY RING/U-box 472 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4225 Mtr-Chr4 56363418 56367488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4225 396 530 C3H Transcription Factor Family AT5G45290 50.658 2.09e-38 146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4225 4 56363418 56367488 Mtr4g4225 4 56363418 56367488 ECH