Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4221 ATGGTGTATTGTGTGGTCTGGAGAATGGGAAGTAACAGCGTTGAAAAGATCCCTAGCAATAACAGCACTGGAAGTTCAGAAACCACTATTGAGATAAAGCTCAAAACACTTGATTCACAAACTTATACTCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTTTGAAAGAACAGATTGCTACTGTAACTGGAGTGTTATCAGAACAGCAGCGCTTAATTTGCCAAGGGAAAGTTCTAAAGGATGATCAACTACTGTCTGCATACCATGTTGAAGATGGTCACACATTGCATCTGGTTGTGAGGCAACCTGATCTGCCACCTCCAGGAAGTCTGCCCAATCATGCAGCGACTGAGCCAAATTCAAGCACAAGCCATAGTCACAGTACTCAAGTCGCTCCAGGAGTCTTCATTGAAACATTCAATGTTCCTATTCAGGGCGATGGAGTTCCACCTGAAATAAATAGGATTGTGTCTGCTGTTTTAGGCTCGATCACTGGACTTCCAAATTTTGCAAGTGGTGGAGAAGGGATTGTTGTCAGGGAGCATGATTCCCAAGGCCTTGGAAGAACTTTGGATTCTAGTGGAACATCAGATCCGTTCCGTCCCCTACTTGATCAAACTGGTTCACAGAGTGTATCAGATAGATTACGGAATACTTTTGGACTTCCGGCGTCAGTTTCTCTAGGGTCTTTGCAGCCTCCTGTTATTCCTGGTTCTTTGACAACTTTGTCCCAGTACCTAAGTCATATGAGTCGTGAATTTGATACAATTGTCAGAGAAGGGGGGAATGGCCAAGCAGCAGAGGCTCATAGTAATGAAGCAGTGGGATCTGGTTCTTCACCTTTGGGTTCAACAGCAGAAAATCTTCCATCACCCGCATCCTTGGCAGAAGTCTTGCTTTCTACGAGACAAATGATCATCGAACAAGCTGGGGAGTGCATACTTCAACTGGCAAGACAACTACAGAATCAAGCAGATATAACTGATGCCCCCTCGCGATCAACCACTCAATCTAGGGCATTGAGGACTGGACTATTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGTACAACCATGACATTGCGTTTAGGTCAAACACCGTCTGAAGCTGTAGTTAATGGTGGACCTGCAGTTTTTATATCACCTACTGGTCCTAATCATATCATGGTTCAGCCTCTTCCTTTTCAAGCTGGAGCAAGCTTTGGTGCTGTCCCTGTAGGAGGTGCACAGACTGACTCAAGTTTAGGTAGTGGACTTGGCTCAAGTCTTTTCCCAAGGCGTATCGATATACAGATAAGACGAGGCACTTCAACAACCACACCCAATGCCAGCCAAGAAGAGCGTGGGGATACACAGTCTGCTTCAGTGCAAAGAAATCCAGTTGAAAGTTCTGCTAGTCAAGCAACCTCTAGGCGTCCAGATGCATCTATTGCTGGAGAATCAGGAATAAGGATAGTGCCGATTAGAACCATGGTTGCAGCAGTACCTGGTCCCTTGGGTCGTGCTTCTTCAGAACCATCTGGTAATTCTACTGGGCTTTACCATCCCGTTCTTGGGAGATTTCAACGCGTAGGGCAGGCAAATAGTGAACAGGGATCTCAATCAGCAAGTCAGCATCGTGCTGCACCACATTCAACTCCTGAATCCACATTGCAAAGGCAAAGAACGGAAGACTCTGCAAGGAATGGTGCCTCACAAACTCCATACACAAGACAAGAGCCATCTAATTCCCGTGTTGTAAATATCAATATTCTGGCAGCTGGTGGGCCCCAAAACAGCCAAGAATCTGATAGACAGATACCAAGCAGTGTGTATCAGTTTTTAAGAACACTCTTTCCCACTGGAGAAATACACGTGGAGGATTCAAGCTTACAAGGAGCAAATGCAAGTTCCACCTCAATGCATGCTGCAACATCAAGGGGTGCTCCCCAAGCCCCTGAAGCTGAACCTGCTGTTAGTGCTGAAGGAGTATTTTTGTCTAATGTACTCCGTGAGATCATGCCGGTCATATCTCAACAAGTAGGGTCTGAGAGAAATCCTTCTGATGATCAAGCGGCTCAAGATTCGTCAACCCAGGTTGGAACTAATGCTGGGACATCGCGCAGACACAGTGGTTCTGAATCAGGTGCTCCAGATCCAAAACGCCAAAAGATGGAATGA 2169 0.4587 MVYCVVWRMGSNSVEKIPSNNSTGSSETTIEIKLKTLDSQTYTLRVDKQMPVPALKEQIATVTGVLSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSLPNHAATEPNSSTSHSHSTQVAPGVFIETFNVPIQGDGVPPEINRIVSAVLGSITGLPNFASGGEGIVVREHDSQGLGRTLDSSGTSDPFRPLLDQTGSQSVSDRLRNTFGLPASVSLGSLQPPVIPGSLTTLSQYLSHMSREFDTIVREGGNGQAAEAHSNEAVGSGSSPLGSTAENLPSPASLAEVLLSTRQMIIEQAGECILQLARQLQNQADITDAPSRSTTQSRALRTGLLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPTGPNHIMVQPLPFQAGASFGAVPVGGAQTDSSLGSGLGSSLFPRRIDIQIRRGTSTTTPNASQEERGDTQSASVQRNPVESSASQATSRRPDASIAGESGIRIVPIRTMVAAVPGPLGRASSEPSGNSTGLYHPVLGRFQRVGQANSEQGSQSASQHRAAPHSTPESTLQRQRTEDSARNGASQTPYTRQEPSNSRVVNINILAAGGPQNSQESDRQIPSSVYQFLRTLFPTGEIHVEDSSLQGANASSTSMHAATSRGAPQAPEAEPAVSAEGVFLSNVLREIMPVISQQVGSERNPSDDQAAQDSSTQVGTNAGTSRRHSGSESGAPDPKRQKME* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4221 722 PRINTS Ubiquitin signature 40 60 IPR019956 -
Mtr4g4221 722 PRINTS Ubiquitin signature 61 81 IPR019956 -
Mtr4g4221 722 PRINTS Ubiquitin signature 82 103 IPR019956 -
Mtr4g4221 722 SUPERFAMILY Ubiquitin-like 19 119 IPR029071 -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 270 289 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 186 212 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 435 477 - -
Mtr4g4221 722 ProSiteProfiles Ubiquitin domain profile. 30 105 IPR000626 GO:0005515
Mtr4g4221 722 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 722 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 627 652 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 627 642 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 188 212 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 102 130 - -
Mtr4g4221 722 Pfam Ubiquitin family 32 102 IPR000626 GO:0005515
Mtr4g4221 722 Gene3D - 23 124 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 528 581 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 114 130 - -
Mtr4g4221 722 SMART ubq_7 30 101 IPR000626 GO:0005515
Mtr4g4221 722 MobiDBLite consensus disorder prediction 434 484 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 675 709 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 674 722 - -
Mtr4g4221 722 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 9 722 - -
Mtr4g4221 722 MobiDBLite consensus disorder prediction 262 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4221 Mtr-Chr4 56309508 56323342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4221 30 101 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 4.27e-09 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4221 4 56309508 56323342 Mtr4g4221 4 56309508 56323342 ECH