Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4209 ATGTCTTCCGAGATCGAGGTCGTCGAGGAGGTTCAATCTCGCCGCGATCAACAATCGCCACCGTCATCATCATCATCATCTTCCGCCGTCGTCGACGAAGTCGCCAGCCGGAACGACGTGTACACTGCCGCGGCTTATGGGGATTTGGAGAAGCTACATAGATTGGTGGAGATTGAAGGTTGTCTTGTTAACGAGCCTGATGGTTTGGGTTACTACGCTCTTCAGTGGGCTGCTCTTAATAACCGCACTGCTGCTGCTCAGTACATTATTGAGCATGGTGGAGATGTAAATGCAACAGATCATTCTGGCCAGACAGCATTGCATTGGAGTGCGGTTCGGGGTGCTATTCAGGTTGCAGAGCTATTACTCCAAGAGGGTGCTCGAGTGAACGCTGCTGACATGAATGGGTATCAGATAACACATGTTGCTGCTCAATATGGTCAGACGGCTTTCCTTTACTATGTTATTTCAAAATGGAATGCTGACCCTGATGCTCCTGATAAAGATGGAAGATGCCCCTTGCATTGGGCTGCTTACAAAGGTTTTGCTGATTGTATACGTCTTCTGTTATTTCTTGATGCACATCGGGGGCGTCCGGATAAAGACGGTACCACTCCTCTCCATTGGGCTGCTATGCGAGGTAACTTGGAGGCCTGTACCGTGTTAGTACAGGCTGGCAAAAAGGAAGACCTGGTAGTGACTGATATTAGTGGCCTTACGCCAGCTCAACTTGCTTCTGATAGGAAACACAGACAAGTTGCTTTTTTCCTTGGAAATGCCCGAATGCTGCTTGATAAAAGCTTTGACTCTAACAGCCGCCTTGGAAAGATATCTAAATTAGGACTTGCTCCTGTACTTTGGTGCATAATTTTTGTGCTATTGGTCACCTATATTCATTCGGTCATCTTGGCAACAAATATGCCAAAGCTGACAGCATCAGCTGGCCTCTTTGCATGGTTTGGAGTGTTGCTTGCTACTGTTGGATTGGTGATGTTTTATAGGTGTAGCAGCAAGGATCCAGGTTATATCAGAACGAATGGGCATGACACTCAGAATATGAAAGATGATGAGCCTCTTTTGAAGATTGAGAAAAATAATCCTGCTTTGCTAGCTGGAAATTGGTCCCAACTTTGTGCAACATGCAAGATTGTCAGACCTCTTCGTGCAAAACATTGTTCTACATGTGATCGTTGTGTGGAGCAATTTGACCATCATTGTCCTTGGGTATCCAATTGCATTGGCAAGAAGAATAAATGGGATTTCTTTGCTTTTCTTATTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTATGTCTTACAAGAGTACTAACTGATCCACTTGCTCCTTCTTCGTTTGGGGCATGGATTAATTATGCTGGTAAAAATCACATTGGTGCAATATCATTTCTAATTGCTGATTTTTTCCTCTTCTTCGGAGTGTTTGCTTTGACAGCTGTTCAGGCTAGTCAGATATCACGCAATATTACAACAAATGAAATGGCAAATGCATTGCGGTATAGCTACCTCAGAGGTCCAGGTGGTAGATTCAGAAACCCATATGATCATGGTATCAAGAAGAACTGTTCTGATTTTTTGATCAATGGGTACAATGAAGACTTGGAGTATGTTGAAGAATCAGGTAACTCTGAGGAGGGTCTAGGAATGATGCACATGGCAAGGGGCTCAACCATAACAAATGGAGACTCACATTCTCATTCTGATCATGCCAACGGAAACGGAAATGGCCATGTTGTTATTAATGTGGATTCAAACAGTACCAACTCAAAAACACATCATGGTCATAGTAATGGTCATGTTCATTCTTCACATTGTAGTCATAGTAACCAAGGTAAAACCAGAAATGACAGCATTCCTGTGGGCTTAGGTCTTGGCCTCGGACGGAACACCAGATCTGTTTCATCCTAG 1929 0.4401 MSSEIEVVEEVQSRRDQQSPPSSSSSSSAVVDEVASRNDVYTAAAYGDLEKLHRLVEIEGCLVNEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNATDHSGQTALHWSAVRGAIQVAELLLQEGARVNAADMNGYQITHVAAQYGQTAFLYYVISKWNADPDAPDKDGRCPLHWAAYKGFADCIRLLLFLDAHRGRPDKDGTTPLHWAAMRGNLEACTVLVQAGKKEDLVVTDISGLTPAQLASDRKHRQVAFFLGNARMLLDKSFDSNSRLGKISKLGLAPVLWCIIFVLLVTYIHSVILATNMPKLTASAGLFAWFGVLLATVGLVMFYRCSSKDPGYIRTNGHDTQNMKDDEPLLKIEKNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFAFLILEVSAMLVTGGVCLTRVLTDPLAPSSFGAWINYAGKNHIGAISFLIADFFLFFGVFALTAVQASQISRNITTNEMANALRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDLEYVEESGNSEEGLGMMHMARGSTITNGDSHSHSDHANGNGNGHVVINVDSNSTNSKTHHGHSNGHVHSSHCSHSNQGKTRNDSIPVGLGLGLGRNTRSVSS* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4209 642 ProSiteProfiles Ankyrin repeat region circular profile. 102 133 - -
Mtr4g4209 642 SMART ANK_2a 202 233 IPR002110 GO:0005515
Mtr4g4209 642 SMART ANK_2a 69 98 IPR002110 GO:0005515
Mtr4g4209 642 SMART ANK_2a 102 131 IPR002110 GO:0005515
Mtr4g4209 642 SMART ANK_2a 237 266 IPR002110 GO:0005515
Mtr4g4209 642 SMART ANK_2a 135 165 IPR002110 GO:0005515
Mtr4g4209 642 SMART ANK_2a 169 201 IPR002110 GO:0005515
Mtr4g4209 642 SMART ANK_2a 35 65 IPR002110 GO:0005515
Mtr4g4209 642 MobiDBLite consensus disorder prediction 564 642 - -
Mtr4g4209 642 MobiDBLite consensus disorder prediction 14 31 - -
Mtr4g4209 642 Pfam DHHC palmitoyltransferase 376 503 IPR001594 GO:0016409
Mtr4g4209 642 MobiDBLite consensus disorder prediction 564 600 - -
Mtr4g4209 642 ProSiteProfiles Ankyrin repeat profile. 169 201 IPR002110 GO:0005515
Mtr4g4209 642 PANTHER - 1 603 - -
Mtr4g4209 642 PANTHER PROTEIN S-ACYLTRANSFERASE 24 1 603 - -
Mtr4g4209 642 Pfam Ankyrin repeats (many copies) 204 257 IPR002110 GO:0005515
Mtr4g4209 642 ProSiteProfiles Ankyrin repeat region circular profile. 202 226 - -
Mtr4g4209 642 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Mtr4g4209 642 ProSiteProfiles Ankyrin repeat profile. 102 134 IPR002110 GO:0005515
Mtr4g4209 642 ProSiteProfiles Ankyrin repeat region circular profile. 169 190 - -
Mtr4g4209 642 Pfam Ankyrin repeats (3 copies) 42 133 IPR002110 GO:0005515
Mtr4g4209 642 MobiDBLite consensus disorder prediction 1 31 - -
Mtr4g4209 642 SUPERFAMILY Ankyrin repeat 38 258 IPR036770 -
Mtr4g4209 642 MobiDBLite consensus disorder prediction 608 623 - -
Mtr4g4209 642 Gene3D - 7 272 IPR036770 -
Mtr4g4209 642 ProSiteProfiles Ankyrin repeat profile. 202 234 IPR002110 GO:0005515
Mtr4g4209 642 ProSiteProfiles DHHC domain profile. 376 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4209 Mtr-Chr4 56152748 56160583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4209 43 222 Ion Channels AT2G25600 32.044 3.99e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4209 K20032 - gmx:100788923 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4209 4 56152748 56160583 Mtr4g4209 4 56152748 56160583 ECH