Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4164 ATGTCAGTCACTTTTCCTCTAACATCCAAAAGGAGAAGATTAACCCAGCTTTATTCCACGGCTACAGTTGCAGCGATGAATGAAAGATTTGGACGAGAGATTCATGTTTTTGAAACATCTTCACTTTCTCCATCACAAAATTCTACAACAAACAAAGAAGACGAGACCGATGAGTTCTATGAGTTGACTGATAATGATTATTACAAACTCTTGTCTACTAAAAAGGAAGATAAAGTTTTGAAGACTCGAAATCTTAGAGAAGCAGAAGTCGCAGCTTGCAGGCCAAGGATAACCAAGGCTATAATTAGAGTTCGTTTTCCTGATAATCACACGTTGGAAGCTACATTTAATCCATCAGAAACTATCCAAAGTTTAGTTGATCTACTCAATAAAGTGATTGCACAACCAGAGAAGCCATTTGATTTATATACGACTACGCCCAAAAAGAAGCTGATCAAAGATGTTTCACAGGATTTCTATACTGCTGGATTTTGTCCTGGTGCCATTGTGTACTTTTCATATGATGTTTCAAAAGGTGATAGCAACCATGATGGCCCTTACTTATTAGAAGGGGTGATGTCCTTGAAGGGTTTGGATGGATGTTGCTAA 609 0.3793 MSVTFPLTSKRRRLTQLYSTATVAAMNERFGREIHVFETSSLSPSQNSTTNKEDETDEFYELTDNDYYKLLSTKKEDKVLKTRNLREAEVAACRPRITKAIIRVRFPDNHTLEATFNPSETIQSLVDLLNKVIAQPEKPFDLYTTTPKKKLIKDVSQDFYTAGFCPGAIVYFSYDVSKGDSNHDGPYLLEGVMSLKGLDGCC* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4164 202 CDD UBX2_UBXN9 100 174 - -
Mtr4g4164 202 SUPERFAMILY Ubiquitin-like 74 172 IPR029071 -
Mtr4g4164 202 Pfam UBX domain 99 167 IPR001012 GO:0005515
Mtr4g4164 202 Gene3D - 24 171 - -
Mtr4g4164 202 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 8 199 IPR044232 GO:0032984|GO:0051117
Mtr4g4164 202 ProSiteProfiles UBX domain profile. 95 172 IPR001012 GO:0005515
Mtr4g4164 202 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1-RELATED 8 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4164 Mtr-Chr4 55662942 55665442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4164 28 128 C2H2 Transcription Factor Family AT2G01650 29.524 1.82e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4164 K15627 - gmx:100818386 265.003