Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4160 ATGTCAACAAACCAACCAAAACCCAACAACAACAACAAGAAAAACAGCATGGAGATGGATAACAATAAGTGTGGATGTTGGTCTGTCCTTAAACGTGGTGTTTGTAAACCCTCTGCTTCTAGACACTCTCCTAACACTATCCCTCGTACTAGTGTCGTTCATGATGCAGCAACGGAGACACGATACCTGAATGCTAGCAATCGAGAACTGTGTCCTCCAAATGAAGCTAGAATCTCTTCTGATAATCCCGATCCTCCACCTCAGGAAAATAAGGCTCCATGTCAGCTTCTTCAATTCACATTTCAAGAGCTGAAATCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGCTTTGGATATGTGTTCAAAGGATGGATTGAGGAAGGTGGAACTGCCCCGGCAAAACCTGGTTCAGGAGTTACCGTAGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTCGATTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACTCGTGGAAGTCTAGAAAATCATCTTTTCAGAAGAACTGTACCTCTTCCATGGTCCAACAGGGTGAAGATTGCACTTGGTGCTGCTAAAGGATTGGCTTTCCTCCATAATGGTCCAGAACCAGTCATCTATAGAGATTTCAAAACATCAAACATTCTGCTTGATACGGAGTATACCGCAAAGCTTTCAGATTTCGGTCTAGCAAAAGCAGGACCTCAAGGAGACAAGACACATGTTTCAACCAGAGTTGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGACACTTAACTTCTAAGAGTGATGTTTATAGCTTCGGAGTTGTGTTACTCGAGATTTTAACAGGAAGAAGATCGATGGACAAGAAGCGTCCGAGCGGGGAACAAAATCTTGTTTCATGGGCTAGACCATATTTAGCTGACAAGCGAAAACTGTACCAACTTGTTGATCCTCGCTTGGAACTAAATTATTCTTTAAAAGCGGTGCAGAAAATTGCTCAGTTAGCTTATAGTTGCCTTAGTAGAGACCCTAAAAGCCGTCCTAACATGGACGAAGTTGTGAAGGCTCTGACACCATTGCAGGATCTTAACGACTTTGCTATCTTGTCTTATCACTCTCGGTTATCTCAGCAAGGGAGAAGAAAGAAGAAACCAGATGGAACTCCGCATATCACTTATACACATTCCAAAAGCATGAGGGCTTCACCTTTGAACACCGGCAGGCACATACGATGA 1335 0.4345 MSTNQPKPNNNNKKNSMEMDNNKCGCWSVLKRGVCKPSASRHSPNTIPRTSVVHDAATETRYLNASNRELCPPNEARISSDNPDPPPQENKAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEGGTAPAKPGSGVTVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYTAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKAVQKIAQLAYSCLSRDPKSRPNMDEVVKALTPLQDLNDFAILSYHSRLSQQGRRKKKPDGTPHITYTHSKSMRASPLNTGRHIR* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4160 444 Gene3D Transferase(Phosphotransferase) domain 1 197 407 - -
Mtr4g4160 444 ProSiteProfiles Protein kinase domain profile. 111 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4160 444 SUPERFAMILY Protein kinase-like (PK-like) 93 398 IPR011009 -
Mtr4g4160 444 MobiDBLite consensus disorder prediction 1 20 - -
Mtr4g4160 444 Gene3D Phosphorylase Kinase; domain 1 87 196 - -
Mtr4g4160 444 Pfam Protein tyrosine and serine/threonine kinase 115 390 IPR001245 GO:0004672|GO:0006468
Mtr4g4160 444 MobiDBLite consensus disorder prediction 408 444 - -
Mtr4g4160 444 MobiDBLite consensus disorder prediction 67 90 - -
Mtr4g4160 444 PANTHER OS01G0588500 PROTEIN 87 410 - -
Mtr4g4160 444 CDD STKc_IRAK 117 393 - -
Mtr4g4160 444 PANTHER OS01G0588500 PROTEIN-RELATED 87 410 - -
Mtr4g4160 444 ProSitePatterns Protein kinases ATP-binding region signature. 117 149 IPR017441 GO:0005524
Mtr4g4160 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4160 Mtr-Chr4 55630113 55634015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4160 99 390 Glycoside Hydrolase AT3G07070 55.743 3.84e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mtr4g4160 PK_Tyr_Ser-Thr 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4160 - - gmx:100785385 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4160 4 55630113 55634015 Mtr4g4160 4 55630113 55634015 ECH