Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4156 ATGATGAGGGGGGAGGATGATTATATGCCTGGAAACATTTTAGAAATCGAGCTTCATAATTTCATGACATTTGATTACTTAAAATGTAAACCCGGGCCTCGCTTGAATCTTGTAATTGGTCCAAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTCTGCGGAGAGCCCCAGTTGCTTGGGCGAGCCACAAGTATTCCGGCATATGTGAAGCGGGGAGAAGATTCTGGCCACATTAAGATTACCTTGAGGGGAGACCATAAAGAGGATCACATTACAATTATGCGTAAAATAAACACCATCAACAAGTCCGAATGGGTTTTAAATGGAAATATTGTGTCCAAAAAGGATGTGGCTGAAACCATTCAGAGGTTTAACATCCAAGTGAATAATTTGACTCAATTTTTACCGCAAGACAGGGTCTGTGAGTTTGCAAAGTTAACTCCTGTGCAACTTCTGGAAGAGACAGAAAAGGCTGTTGGTGATCCACGACTTCCAGAGCAACATCGTGCACTTATTGATAAAAGTCGTGCATTGAAGCATGTCGAGCTGTCTCTGGTGAAAAATGAAGGAACGTTAAATCAGTTGAAGGAACGTAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCTTACCAAGGCCGAATCAATGAAAAAGAAATTGCCATGGCTGAAGTATGATATGAAGCAGGCTGAATATCGTGAAGCTAAGGAGCGTGAGAAGGCTGCAGCAAAGGAGTTTGAGAAGGCTGCAAAATTATTAAACGAACTTAAAGAACCTATTAAGAAACAAAAAGAGGAGAAAGCTGCATTAGATGCAAAATGTAAAAAGGCTAACAACCGAATAAGTGACAATGCCAAGAAGAGAATGGAACTTATGGAGAAAGAGAACCAATTAGAGGTGGAATTACAAGGGAAGTACAAAGAGATGGACGAGTTGAGGAAGCAGGAAGAAACTCGGCAACAGAAATTGAAAAAAGCCAGGGAGGATCTTGCAGCTGCTGAACTTGAACTTGAGAGTCTAAACCCTTATGAACATCCCAGGGACGAGATTCATAGACTGAGAGAGGGAATTTTGGAGTTGGATGATTCTGCTAATCAAGCGAGACAGAATAAGTCACAAGCAGAAAGCGAAATAAAGCAAAAAAAGTTCTCCTTAACGAAGTGTAAAGAGAGGTTGAAGGAAATGAATAATAAAAGTACCAAATGTTTGAATGCATTGCGAACATCTGGGGTTGAAAGAATTTTTGATGCTTATAAATGGGTCCAAGAGCATCGGAATGAATTCCACAAGGAGGTGTATGGCCCAGTTTTAGTTGAGGTGAATGTCTCGGATCAATCTCATGCTGGATATCTAGAGGGTCAAGTTGCTTGGTACACTTGGAAGTCTTTCATAACACAGGATCCTCGCGATCGGGACTTCTTGGTGAACAACCTACGGAACTACGATGCACCAGTTTTAAATTATACTGGTCGTGATAACCAAAGAGAGCCGCCTCCTGAAATATCTGCCAATATGCGTGCTCTTGGTATCCACTCTCGTCTGGACCAAATTTTTGATGCTCCTGTTGCTGTCAAGGAGGTGTTGATTAGCCAATCTAATCTTGATCATTCATTTATTGGATCGAAAGAAACTGATCAGAAAGCTGATGAGGTCCCAAAATTGGGAATTACTAGTTTATGGACACCAGAAAATCACTATCACTGGTCTAAGTCTAGATATGGAAATCATGTCTCAGCAGTTGTTGAACAAGTGCAACGCCCTCGACTTCTAACGAATAATTCAAATGTGAGGGACATTGAGGATCTGAGCTCTCAGGAAAGGGAGCTTCAAGAACAAATTGCTTCCTTGGAGGAAAGTCTCAAAAAGTTTCAAGACGAGGAAAAAAGCTCTGTGAATCAGGCTGCTAATCTTCGTAAACAGATGGAGGACATTCGTTCTGAAGCACAAAATAAGCAAAAAGAGCGACAAGCAATTGTTAGGTGTATTGAACAAAAGAAAGGGAAACTGAAATCAATGGAGGAGCAAGATGATTTAGATACGGAGTTAGCGAAGCTTGTTGATCAGGCAACAAATTGTAACATTCAGCGATTCCATAATGCAATTAAAATTAAGGATCTTCTTGTTGATGCTGCTGGTCACAGACGAAGTTTTGTTGAACAACGTATGGCTTTCATTGAATTTGATGCAAAGATTGGAGAAGCGGAGGCCAATCTGAAGCAGCATGAAAATTTTGCTATGCAGACATCATTGCATTATAATAACTCTAAGAAAGAGGCTGAAGAATGTAGACAGAAGCTTACAGATTTATTGAACTATGCTAAGTCAATTGCCCGGCTTACACCTGACCTAGAGAAGGAGTTTCTTGAGATGCCTACTACAATAGAGGAGTTGGAAGCAGCTATCCAAGATACCACTTCTCAAGCCAATTCAATCCTTTTTGTCAATAGTAACATATTGGAACAATATGAGGCTCGTCAAAGACAGATAGAAGATCTTGCAAAAAAACTTGATGCAGACAAGAAGGAATCCACAAGGTGTCTAGCTGAATTGGATAACATTAAGGGAAAATGGCTCCCTACATTGAGAAACCTTGTGGCCCAGATAAATGAAACCTTTAGTCAAAATTTTCAACAGATGGCTGTTGCCGGAGAAGTTTCACTAGATGAGCATGATATGGACTTTGATCAATATGGAATACATATAAAAGTCAAATTCAGAGAAAATGGACAGCTTGAAGTTCTCAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCTCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGAATGGATCCAATAAATGAAAGGAAGATGTTTCAGCAACTAGTGAGAGCAGCAAGCAAGCCAAATACACCACAGTGTTTCTTACTTACCCCAAAGTTGTTACCAGATCTGCAATATAGCGAGGCATGCAGTATATTGAATGTAATGAATGGGCCTTGGATTGAGCAACCCTCAAAGGTCTGGACTGCCGGTGATCGATGGAGTATTATCACTGGACATGTTGAAGAGACCATGTGTTAA 3126 0.4053 MMRGEDDYMPGNILEIELHNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIPAYVKRGEDSGHIKITLRGDHKEDHITIMRKINTINKSEWVLNGNIVSKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPRLPEQHRALIDKSRALKHVELSLVKNEGTLNQLKERNAELEKDVERVRQRDELLTKAESMKKKLPWLKYDMKQAEYREAKEREKAAAKEFEKAAKLLNELKEPIKKQKEEKAALDAKCKKANNRISDNAKKRMELMEKENQLEVELQGKYKEMDELRKQEETRQQKLKKAREDLAAAELELESLNPYEHPRDEIHRLREGILELDDSANQARQNKSQAESEIKQKKFSLTKCKERLKEMNNKSTKCLNALRTSGVERIFDAYKWVQEHRNEFHKEVYGPVLVEVNVSDQSHAGYLEGQVAWYTWKSFITQDPRDRDFLVNNLRNYDAPVLNYTGRDNQREPPPEISANMRALGIHSRLDQIFDAPVAVKEVLISQSNLDHSFIGSKETDQKADEVPKLGITSLWTPENHYHWSKSRYGNHVSAVVEQVQRPRLLTNNSNVRDIEDLSSQERELQEQIASLEESLKKFQDEEKSSVNQAANLRKQMEDIRSEAQNKQKERQAIVRCIEQKKGKLKSMEEQDDLDTELAKLVDQATNCNIQRFHNAIKIKDLLVDAAGHRRSFVEQRMAFIEFDAKIGEAEANLKQHENFAMQTSLHYNNSKKEAEECRQKLTDLLNYAKSIARLTPDLEKEFLEMPTTIEELEAAIQDTTSQANSILFVNSNILEQYEARQRQIEDLAKKLDADKKESTRCLAELDNIKGKWLPTLRNLVAQINETFSQNFQQMAVAGEVSLDEHDMDFDQYGIHIKVKFRENGQLEVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTAGDRWSIITGHVEETMC* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4156 1041 CDD ABC_SMC5_euk 914 1016 - -
Mtr4g4156 1041 Coils Coil 610 665 - -
Mtr4g4156 1041 Coils Coil 236 291 - -
Mtr4g4156 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 763 992 IPR027417 -
Mtr4g4156 1041 Pfam RecF/RecN/SMC N terminal domain 13 982 IPR003395 -
Mtr4g4156 1041 Coils Coil 368 395 - -
Mtr4g4156 1041 Gene3D - 830 1011 IPR027417 -
Mtr4g4156 1041 Coils Coil 826 853 - -
Mtr4g4156 1041 Coils Coil 190 224 - -
Mtr4g4156 1041 CDD ABC_SMC5_euk 11 157 - -
Mtr4g4156 1041 Gene3D - 12 217 IPR027417 -
Mtr4g4156 1041 Coils Coil 306 347 - -
Mtr4g4156 1041 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 2 1038 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Mtr4g4156 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 981 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4156 Mtr-Chr4 55550169 55569058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4156 1 1041 Structural Maintenance of Chromosomes family AT5G15920 61.612 0.0 1294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4156 K22803 - gmx:100778678 1594.33