Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4147 ATGAATTCTGATAGGTTGATGAAATGGATGTATGGCTACAACACAACCAAATCATCAGCTGATACAAATGGTTTTGGTAGTCATGCTCCAGGCATCATAAAAGCGATGCAAATGCTTGACACTCAGTTTGAGAATCTACATGCATCATCACCATCATCTGATAGGAATGATGTCATCAACAACAACAAGATGGTGTTGAATACTTCTTCCGCTTTTGCTCATCTTGATCTCCTTGGAGGCTCGTCTTCACATTCACAACAACCACCATCTGAGACAAACAATATTGTTGCTACTAATGGTGATGAAATCCGGGCTTTTAATAATACCAACATGAAGAGGAAAAAAGAAGAAATTGTTGATGATGGTAGAACCCACAGTCTATCACACAATAAAAATGGACCATATACGTGTCCAAAGTGTAACAAAGTACTAGCAACATCACAAAAATTTGCTAGTCATGCATCAATACACTACAAGTCAGAAAGTGAAGAAGAGAAAAAAAAGAGATACATGTCTAGGATCCGAAAGAGACCAGATCTCCGATTCCAAAAGCTCAATGATGGAACAACTACTTTTGTTCCCATTGCTTCTGTTGACCAGTCACATGCTGTTTCTGTAAGTTATAATAATCATAATATGAGTGCGCCTGCTCCTCCTCTAAGTGGGGTCAAAGTTAAATTGGAGCCTGCTGATAACTAA 699 0.3848 MNSDRLMKWMYGYNTTKSSADTNGFGSHAPGIIKAMQMLDTQFENLHASSPSSDRNDVINNNKMVLNTSSAFAHLDLLGGSSSHSQQPPSETNNIVATNGDEIRAFNNTNMKRKKEEIVDDGRTHSLSHNKNGPYTCPKCNKVLATSQKFASHASIHYKSESEEEKKKRYMSRIRKRPDLRFQKLNDGTTTFVPIASVDQSHAVSVSYNNHNMSAPAPPLSGVKVKLEPADN* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4147 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 162 IPR013087 -
Mtr4g4147 232 MobiDBLite consensus disorder prediction 212 232 - -
Mtr4g4147 232 SUPERFAMILY beta-beta-alpha zinc fingers 123 158 IPR036236 -
Mtr4g4147 232 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Mtr4g4147 232 Gene3D Classic Zinc Finger 107 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4147 Mtr-Chr4 55432896 55433840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4147 116 194 C2H2 Transcription Factor Family AT5G22990 55.000 2.32e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g4147 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4147 - - mtr:MTR_3g084720 195.282