Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4143 ATGTCTAGCTGCAGCATCGATGTTGCACCTGCAGCTGCAGAGCAACTTTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATAGTGACCGTTCGATGTGGTCACTGCACAAATCTATGGTCAGTAAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGCACCTAGCCACTGCATGAATCCAGAGTATAGGATTCGAACTAGCTCCACTCCCAAATGCAACGATAGGATTGCAATGCGTTCTGCACCAACCACCCATGTTACTGAGGAAAGGGTTGTTAACCGCCCTCCCGAGAAGAGGCAACGTGTCCCTTCTGCTTATAATCAGTTCATCAAGGAAGAGATTCAGAGGATCAAGGCTAATAATCCTGATATTAGTCACAGAGAAGCTTTTAGTACAGCTGCAAAGAACTGGGCGCATTTTCCTCATATTCATTTTGGGCTGATGTTGGAGAGCAACAATCAAGCTAAGATAGAGAATGTCTCTGAGAAGCGTTTGATGTCTAGGTCTGCGCTAATGAACAAATGA 576 0.4583 MSSCSIDVAPAAAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPSHCMNPEYRIRTSSTPKCNDRIAMRSAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKIENVSEKRLMSRSALMNK* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4143 191 PANTHER PROTEIN YABBY 6-RELATED 1 181 IPR006780 GO:0007275
Mtr4g4143 191 Gene3D High mobility group box domain 103 180 IPR036910 -
Mtr4g4143 191 SUPERFAMILY HMG-box 108 157 IPR036910 -
Mtr4g4143 191 PANTHER AXIAL REGULATOR YABBY 5 1 181 - -
Mtr4g4143 191 Pfam YABBY protein 12 164 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4143 Mtr-Chr4 55352848 55356632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4143 12 174 C2C2-YABBY Transcription Factor Family AT2G26580 77.914 7.58e-90 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mtr4g4143 YABBY 2e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4143 K25796 - gmx:100804731 350.903