Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4133 ATGGTTCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGACATTGGGGTTCTTGGGTTTCAGAGATTCGTCACCCACTTTTGAAGAGAAGGGTGTGGCTAGGAACATTTGAAACAGCAGAAGAAGCAGCAAGAGCATATGATCAAGCTGCGATTTTAATGAGTGGTAGAAATGCCAAAACAAATTTCCCAATAACACAAACTTCTGAAGGTGATCCAAAAAGCATTACAAGTAATGAGAACAAACCTTCAACTTCAAAGGATCTAGAAGAAATTTTACATGCAAAACTTCGAAAATGTAGCAAGGTACCATCTCCTTCCATGACTTGTTTAAGGCTTGACACAGAGAACTCTCACATTGGTGTGTGGCAAAAGCGTGCTGGGAAGTGTTCTGAATCAAATTGGGTTATGACTGTTCAGCTTGGGAAAAAGATGAGTGTAACCCAAGATAGTGGTAGTAGCAGTAGTAGTGTGGCACCTTCATCGGCGGTCGCAACCGAAGAGGAAATTGTGCGAGGAGAGATTGATGAAGAAGATAGAATTGCACTTCAAATGATAGAGGAACTTCTTAATGACAAGAACTGTCCTAGCCCATCAATTAACAATATTAAGCAAGGGGATGATATTGATAACAGCTTTTTTCTTTAA 645 0.4031 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTSEGDPKSITSNENKPSTSKDLEEILHAKLRKCSKVPSPSMTCLRLDTENSHIGVWQKRAGKCSESNWVMTVQLGKKMSVTQDSGSSSSSVAPSSAVATEEEIVRGEIDEEDRIALQMIEELLNDKNCPSPSINNIKQGDDIDNSFFL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4133 214 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Mtr4g4133 214 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Mtr4g4133 214 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Mtr4g4133 214 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Mtr4g4133 214 MobiDBLite consensus disorder prediction 145 162 - -
Mtr4g4133 214 MobiDBLite consensus disorder prediction 62 82 - -
Mtr4g4133 214 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Mtr4g4133 214 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 201 - -
Mtr4g4133 214 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 201 - -
Mtr4g4133 214 MobiDBLite consensus disorder prediction 62 86 - -
Mtr4g4133 214 MobiDBLite consensus disorder prediction 145 166 - -
Mtr4g4133 214 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Mtr4g4133 214 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Mtr4g4133 214 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4133 Mtr-Chr4 55211659 55213155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4133 1 190 AP2-EREBP Transcription Factor Family AT1G15360 63.184 4.20e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr4g4133 AP2 8.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4133 - - gsj:114375848 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4133 4 55211659 55213155 Mtr3g3915 3 52986002 52987309 ECH
Mtr4g4133 4 55211659 55213155 Mtr1g0223 1 2521081 2521971 ECH
Mtr4g4133 4 55211659 55213155 Mtr4g4133 4 55211659 55213155 ECH