Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4117 ATGGCAGCAGCATGGTCTGATTCAACTACTCAAAAACAAAATCGTCCATCTCAACAACTTTACGTTCCACAATTCCGTTCAAACCCAAACAACAACAACATTCATCCATCACCTTATTACAACAACAATCGAACCCATTTTCCATCCAACGATTCACCTCACTACAACACTTTCAATCGTCCCACTCCTAGACCAACACGTGGCAGAGGTGGTTATGGTTTTGGTCACAGCCCTGCTCCGCCACGTCATTACTCTCGTCCTGAACAACAACAACCACGATACTACGATCCTTCTCAAAACCGGTCACCGTTTGAAACAAACGGTGAAAAGGTTGAAAACGGCGTCGTTGCGAATTTTGAAGCGTATGAATCGATACCGGTGGAAGCGACGGGAGAGAATGTTCCACCGCCGGTGAATCTATTTGCCGAAACGGAGCTTCATGAAGATTTGAAGAATAATATTGAGAGATGTAAGTATGTGAAACCTACTCCGGTTCAGCGTTACGCGATCCCCATTGCTGTTGCTGGTAGAGACCTTATGGCTTGTGCTCAAACTGGCTCGGGTAAAACTGCGGCGTTTTGTTTTCCGATCATATCTGGGATCATGAAAGAACGTTTAGCTTCTGGTTTGTTGCCACGTGGAGGTGGTGTTGATTCCGATGTTGCTTTTCCCACTGCACTCATCTTGTCTCCAACTAGGGAGTTGTCTTGCCAGATACATGCTGAGGCCTGTAAGTTTGCACATCAAACAGGAGTGAAGATTGCGGTTGTTTATGGGGGTGCTCCTATTGGACAACAGTTGAGGATTTTGGAGAGGGGTGTTGATATTTTGGTTGCAACTCCGGGGCGTTTGGTGGATTTGATTGAGAGGGAAAGGGTCTCTTTGAAGAAGATTAAGTATCTTGCGTTGGATGAGGCTGATCGGATGTTGGACATGGGTTTTGAGCATCAGATACGTAATATTGTTCAGCAGATGCATATGCCTCCTCCTGGTGATAGACAGACATTGCTTTTCAGTGCTACATTTCCTGATAATATACAGAAGCTTGCATCTGATTTTTTATCAAACTATGTGTTCCTGGCTGTTGGAAGGGTTGGTTCAAGCACTGAACTGATTGTACAGAAGATTGAATCTGTACAGGATATGGAGAAAAGAACTCGTCTTGTGGATCTTCTCCGACGTAATGTAGTCAATGGGAAGCTTGCCCTAACTCTTGTATTTGTTGAAACAAAGAAAGGAGCCGATGCTTTAGAAAACTGGTTGTGCAGAATTAACTTTCCAGCTATTGCTATACATGGTGACAAAGTTCAAATGGAGCGGGAAAGAGCCTTGAGATCATTTAAACGTGGTCTTACTCCGATAATGGTTGCAACTGATGTTGCTTCTCGAGGATTGGATATCCCTCACGTGGCTCATGTTATTAACTTTGACTTGCCCAGGGACATAGATGACTATGTACATAGAATTGGTAGGACAGGTCGTGCTGGTCAATCTGGTTTAGCAACAGCTTTCTTTAGCACCAAGAACATGCCTATGGCAAAGTCTCTTGTTGGTCTTTTACAGGAAGCAAAACAAGAGGTACCTGCATGGCTTGTACAATATTCCGAGTGTTCAGCACCAGGTGGACGCAGCAGCGTTGGATCTCAACGGTCACCCTGGAGAGGCAATTATGGAGGCCGCGATTTTCGGAATGCTACGGAACCTGGAATGGTGGAGAATTATAACAGCTACAACAGTAATTACAGCAATTATGGTGATAATGGATACCACAATGTTCCTGAACAGGTGCAGAATTACAACTACAACGGCACCTACAACAATGGAGACCATGCTGCCAACTCATATACTGATGCCTCTTTAGATGTTACAAACTCTAACAATGATTGCTCTTTTGATAACACCAACACAGTGGTTGCTGGTGGTTTCAATTACACCGATGCTGGTTTATTAGAAGGTAGTGATGGTACAAATGGGCCATGCGGTTATGCATCCGTTGTGCCCACTGGATGGGATTAA 2016 0.4439 MAAAWSDSTTQKQNRPSQQLYVPQFRSNPNNNNIHPSPYYNNNRTHFPSNDSPHYNTFNRPTPRPTRGRGGYGFGHSPAPPRHYSRPEQQQPRYYDPSQNRSPFETNGEKVENGVVANFEAYESIPVEATGENVPPPVNLFAETELHEDLKNNIERCKYVKPTPVQRYAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKERLASGLLPRGGGVDSDVAFPTALILSPTRELSCQIHAEACKFAHQTGVKIAVVYGGAPIGQQLRILERGVDILVATPGRLVDLIERERVSLKKIKYLALDEADRMLDMGFEHQIRNIVQQMHMPPPGDRQTLLFSATFPDNIQKLASDFLSNYVFLAVGRVGSSTELIVQKIESVQDMEKRTRLVDLLRRNVVNGKLALTLVFVETKKGADALENWLCRINFPAIAIHGDKVQMERERALRSFKRGLTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQSGLATAFFSTKNMPMAKSLVGLLQEAKQEVPAWLVQYSECSAPGGRSSVGSQRSPWRGNYGGRDFRNATEPGMVENYNSYNSNYSNYGDNGYHNVPEQVQNYNYNGTYNNGDHAANSYTDASLDVTNSNNDCSFDNTNTVVAGGFNYTDAGLLEGSDGTNGPCGYASVVPTGWD* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4117 671 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 51 576 - -
Mtr4g4117 671 SMART ultradead3 158 375 IPR014001 -
Mtr4g4117 671 MobiDBLite consensus disorder prediction 1 107 - -
Mtr4g4117 671 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 139 167 IPR014014 GO:0003724
Mtr4g4117 671 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 51 576 - -
Mtr4g4117 671 SMART helicmild6 415 496 IPR001650 -
Mtr4g4117 671 CDD DEADc_DDX3_DDX4 141 366 IPR044763 GO:0003724|GO:0005524
Mtr4g4117 671 MobiDBLite consensus disorder prediction 91 107 - -
Mtr4g4117 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 513 IPR027417 -
Mtr4g4117 671 MobiDBLite consensus disorder prediction 1 63 - -
Mtr4g4117 671 Pfam DEAD/DEAH box helicase 163 349 IPR011545 GO:0003676|GO:0005524
Mtr4g4117 671 Pfam Helicase conserved C-terminal domain 384 496 IPR001650 -
Mtr4g4117 671 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 360 IPR014001 -
Mtr4g4117 671 CDD SF2_C_DEAD 372 505 - -
Mtr4g4117 671 Gene3D - 94 362 IPR027417 -
Mtr4g4117 671 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 535 IPR001650 -
Mtr4g4117 671 Gene3D - 363 537 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4117 Mtr-Chr4 55091599 55095371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4117 137 516 Eukaryotic Initiation Factors Gene Family AT3G19760 32.637 7.69e-59 202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4117 4 55091599 55095371 Mtr4g4117 4 55091599 55095371 ECH