Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4110 ATGGACGAAGATTTTCAGAAGCGTAACACCGATTGCGTTTATTTCTTGGCTTCACCTCTCACTTGCAAGAAGGGTGTAGAATGTGAGTATAGGCACCATGAAATTGCGAGGCTCAACCCGAGGGATTGTTGGTATTGGTTATCTGGGAATTGTCTTAATCCAACTTGTGCTTTTAGACACCCTCCTGTGGATGGACACACTGGAGTGCCATCTGAACCTACACAATCTTCATTACCTGCAACTGCAAACAAGACAATGGTTACCTGTTACTTTTTCTTCAATGGGTTTTGCAACAAAGGTAGCAAATGCTCATTTTTGCATGGACCTGATGATAGCTCACTCACTGTAAAGCCTTTGAAGAATGACACTGTAAAGCCCTTGAAGAATGACACTGCCAAGCCTTTGAAGAATGACTCAGCAAAGCCTTTAAAGAATGACTCTGCTAAGCCTTTAAAGAATGACTCTGCAAAACCTTTGAAGATTGACACTGTGAAGCCTTTGAAGAATGACTCTGCAAAACCTTTGAAGATTGACACTATGAAGCCTTTGAAGAATGACTCTGCAAAACCTTTGAAGATTGACTCTATGAAGCCTTTGAAGAATGACAATGGAAGCATTAATAAACCCAACTTAGAAAATGGAACTGCATCGGGAAATAAAACAAGTGTAGCATCATCCACACCAAGGGATACCATTACCCGAAAAGCTTTGTCCAATATTAAACCTCAGCCTAAGGAAGATCTTCAGCTACCATTACCCGAAAATGTTAAACAGCAAGGTGATTGCTTCAAAATTTCTTCTTTGGACTATAAAGAAGCTGTTGTGACTCGGTCAGACTCTCCATTACCAGAAGACGGCTTTGCTCATAACATGTCTCCTTCATGCACTGAGCAGAGTTCAGAGGAGCAAGAAAATAGTCAAGTAGAGCCTGAGGAACGGTCCTCCCCTGGATTTGATGTTCTTGTTCATGATGAATCTGGGAACAACCTGGGTTATGAGGGCGGTTCTGAATATTTGCCAGTGCTTGATATGGATGACCATGAACTGAATGAGCAATACTTGGGTTATGAATTTAAAAACACAAATGATTACGACACCATGTGCTCAGGCGCTGATATTCTTTATGAACGGAAAACATATGATGATTACAGATGTTTTGATAGGGATTTTACTAGTCCTAGTGAAAGGAAAGTTTGTGGTTATCCCAGAGAGATGGTCTTAGATACTATATTTTCCAGGAAAAGGATTCGAATGTCCACTTCTGAGATGGCTGCTTGTGATTACTCTGACTTAGATCTACGTCACCATCTGAGAAGACGCAGGGAGGTCAATAGTCCTCCTGACACAGGTCTCTTAAGAAGACATGAGTCGTCTTCTTTGATGGTTCAAAACCGGGAAAGGCGTCACAGCCAAGACATTGGTCAGCAGCAAAATAGAAGATTAACATCACAAGTAGGATTTAGTTCAATCAGAGAAGTTGAAGATCTTTCAATTGCCAACAAGCAAAGGTTATTCAGGCCTTACCAACAAAGTAGGCCAAGAAAGCACTATAGAGAAAAACCAGCTAAACGGCCATTTCCTTCTTCTAAAGAATCCAGGAAACCAATTGTGAAGCAACAGAGATCTATTCAGAAATCCAATGCATTTTCAGGGCCCAAGACTCTTGCAGAAATAAAAGAAGAGAAGAAAAAGTCCGGTGAAAGTTCACATTGTGAAAGCTCGTCAGCTGGTTTCCAGGATCCCAAACCTCTGCATGAAATTCTCAAAGACAGGACCATGGATTGA 1785 0.4123 MDEDFQKRNTDCVYFLASPLTCKKGVECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPVDGHTGVPSEPTQSSLPATANKTMVTCYFFFNGFCNKGSKCSFLHGPDDSSLTVKPLKNDTVKPLKNDTAKPLKNDSAKPLKNDSAKPLKNDSAKPLKIDTVKPLKNDSAKPLKIDTMKPLKNDSAKPLKIDSMKPLKNDNGSINKPNLENGTASGNKTSVASSTPRDTITRKALSNIKPQPKEDLQLPLPENVKQQGDCFKISSLDYKEAVVTRSDSPLPEDGFAHNMSPSCTEQSSEEQENSQVEPEERSSPGFDVLVHDESGNNLGYEGGSEYLPVLDMDDHELNEQYLGYEFKNTNDYDTMCSGADILYERKTYDDYRCFDRDFTSPSERKVCGYPREMVLDTIFSRKRIRMSTSEMAACDYSDLDLRHHLRRRREVNSPPDTGLLRRHESSSLMVQNRERRHSQDIGQQQNRRLTSQVGFSSIREVEDLSIANKQRLFRPYQQSRPRKHYREKPAKRPFPSSKESRKPIVKQQRSIQKSNAFSGPKTLAEIKEEKKKSGESSHCESSSAGFQDPKPLHEILKDRTMD* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4110 594 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Mtr4g4110 594 MobiDBLite consensus disorder prediction 123 237 - -
Mtr4g4110 594 MobiDBLite consensus disorder prediction 522 538 - -
Mtr4g4110 594 Pfam Zinc-finger containing family 6 63 IPR041686 -
Mtr4g4110 594 MobiDBLite consensus disorder prediction 200 237 - -
Mtr4g4110 594 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Mtr4g4110 594 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Mtr4g4110 594 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Mtr4g4110 594 MobiDBLite consensus disorder prediction 459 474 - -
Mtr4g4110 594 MobiDBLite consensus disorder prediction 276 323 - -
Mtr4g4110 594 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Mtr4g4110 594 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 591 - -
Mtr4g4110 594 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Mtr4g4110 594 MobiDBLite consensus disorder prediction 439 484 - -
Mtr4g4110 594 MobiDBLite consensus disorder prediction 123 196 - -
Mtr4g4110 594 Gene3D - 2 64 - -
Mtr4g4110 594 Gene3D - 75 142 - -
Mtr4g4110 594 MobiDBLite consensus disorder prediction 504 594 - -
Mtr4g4110 594 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Mtr4g4110 594 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 591 - -
Mtr4g4110 594 MobiDBLite consensus disorder prediction 555 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4110 Mtr-Chr4 55037990 55041489 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr4g4110 zf-CCCH_3 6.4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4110 - K22415 mtr:MTR_4g114040 1165.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4110 4 55037990 55041489 Mtr4g4110 4 55037990 55041489 ECH