Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4104 ATGAATTTTCCAGACGATATTCCAACCTGTAGGATGTCACCACCGCAGTTTGCTTCATCCAACAACGATATCATTGAAGTGAGGCCTCAAATCCCAATGCAAAACGATCACTTTGAGCCACATTCCTTCAAGAGGGCAAGAATTGCTGATAACAATCCCCCTCCTAGTGGATTGATGTGCCCTCCTTCAAGGATGATTCAGCCTCCACCAAACCGAGGAACAAGCAGCATTTTTTTCAAGACCCGAATCTGCACTAAGTTCAGGTTTGGTACTTGTAGAAACGGTGAAAATTGCAACTACGCTCACGGGGCTGATGAGATAAGGCAGCCACCGCGGAATTGGCAGGAGCTGGTTGATCCTCGCAACGAGGAACGACATCAGGTGGAGACAAGGCAGCAACCACCAAATTGGGATGAAGATCAAAAAATCATTCACAAGATGAAGCTGTGTAAGAAGTATTACATTGGTGAGGAATGTCCTTATGGTGATAAGTGTAGCTTTCTTCATGAGGATCCTGCTAGGTTTAGGGATGCTTCTTGGAAAACAAGAGAGTGTTCTGCAATAAGCGTTGGAAATATTGGTTCTCCAAAGTCTTTTGGGTATGGTTCTAACAATTTGGAAGGCATTAGGGCTGTGAACAAGCCAGCAAGGAGTGCTTATTGGAAGACTAAGCTGTGTCAATGGCAGCATACAGGGAGCTGTCCCTTTGGGGAGACCTGTGACTTTGCTCATGGAGAAGCAGAGTTACAAGCTCCTGGTATGGGCATTGAAGCTGAAGCTGCAGTTGCCATAGTAAACTCAACAAAATCTATCATTCCAACTTCACCAAAAGCCTCAACAGGTATTGCCAATGATTCTACTACTACCTTCACCGCAAGTCTACTCATGACAAAGGATGAGGAGCAGGATAAGAAGAAGCACTTACTTAGGTTGAAATTAGGCAAGAAGATCAATGGTATTTATGGTGATTGGATTGATGATTGA 984 0.4431 MNFPDDIPTCRMSPPQFASSNNDIIEVRPQIPMQNDHFEPHSFKRARIADNNPPPSGLMCPPSRMIQPPPNRGTSSIFFKTRICTKFRFGTCRNGENCNYAHGADEIRQPPRNWQELVDPRNEERHQVETRQQPPNWDEDQKIIHKMKLCKKYYIGEECPYGDKCSFLHEDPARFRDASWKTRECSAISVGNIGSPKSFGYGSNNLEGIRAVNKPARSAYWKTKLCQWQHTGSCPFGETCDFAHGEAELQAPGMGIEAEAAVAIVNSTKSIIPTSPKASTGIANDSTTTFTASLLMTKDEEQDKKKHLLRLKLGKKINGIYGDWIDD* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4104 327 ProSiteProfiles Zinc finger C3H1-type profile. 220 247 IPR000571 GO:0046872
Mtr4g4104 327 MobiDBLite consensus disorder prediction 1 20 - -
Mtr4g4104 327 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Mtr4g4104 327 SUPERFAMILY CCCH zinc finger 219 250 IPR036855 GO:0046872
Mtr4g4104 327 SMART c3hfinal6 78 104 IPR000571 GO:0046872
Mtr4g4104 327 SMART c3hfinal6 220 246 IPR000571 GO:0046872
Mtr4g4104 327 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Mtr4g4104 327 Gene3D - 71 109 - -
Mtr4g4104 327 Gene3D - 214 251 - -
Mtr4g4104 327 Gene3D - 141 173 - -
Mtr4g4104 327 ProSiteProfiles Zinc finger C3H1-type profile. 78 105 IPR000571 GO:0046872
Mtr4g4104 327 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 246 IPR000571 GO:0046872
Mtr4g4104 327 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 79 103 IPR000571 GO:0046872
Mtr4g4104 327 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 169 IPR000571 GO:0046872
Mtr4g4104 327 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 325 IPR045877 GO:0003729
Mtr4g4104 327 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 325 - -
Mtr4g4104 327 SUPERFAMILY CCCH zinc finger 144 171 IPR036855 GO:0046872
Mtr4g4104 327 SUPERFAMILY CCCH zinc finger 77 109 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4104 Mtr-Chr4 55009319 55012814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4104 222 250 C3H Transcription Factor Family AT1G68200 60.000 6.29e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr4g4104 zf-CCCH 9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4104 - - mtr:MTR_4g113970 544.273