Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr4g4103 | ATGGCTTTTCCAGATGATATTCCAACCTCTAAGATGTCCCCACCGCAATTCGCTTCATTGAGCAACAATGACTTCAAAAGAGAAGGAACTTCTCCTTCCAATGCATTGATATGTCCTCCTCCAAGGATGACCCTGCCTCAATCAAACAAATCAGACCACATTTTCTACAAAACACGAATTTGTACTAAGTTCAGATTTGGTACTTGTAGAAACGGACAAAATTGCAACTTTGCTCATGGAGCTGAAGAGTTAAGGCAACCACCACCACATTGGCAGAAGTTAGTTGGTCTGCGTAGCGAAGGTCGGATGCAGCTGGGAAATCATGCTAAAGATAAAAAAATCATACAAACAATGAAACTGTGCAAGAATTATTGCAATGGGGAGGAATGTCCATATGGAGATAACTGTATATTCCTTCATGAAGATCCTGCACAGTTTAGGGATGATTCCTTGAAATTGAGAGAGTGCTCCGCAATAACCATTGAAACTAATAATTTGGAAGGCAGCAGGGCTTTGAACAAGCAAGCAAGGAGCACTTATCGGAAGACTAAGCTGTGTCGCAATTGGAAGCATACAGGATATTGTTCCTTTGGAATGAACTGTCTCTTTGCTCATGGTGAAGAAGAGTTACAAGTTCCTGGTGGAGCCATTCAAGCTGAAGCTGCAGTTACCATAGAAAATTCAACAAACGCTGCCACCTCCCCTGCAAGTCTACTTGTGGAAAAGGAAGAAGAGCATGTTAGGAAGAAACGTATACTTGGGTTGAAATTCAGCCAGATCAATCGTATTTACGGTGATTGGATTGATGATTGA | 813 | 0.417 | MAFPDDIPTSKMSPPQFASLSNNDFKREGTSPSNALICPPPRMTLPQSNKSDHIFYKTRICTKFRFGTCRNGQNCNFAHGAEELRQPPPHWQKLVGLRSEGRMQLGNHAKDKKIIQTMKLCKNYCNGEECPYGDNCIFLHEDPAQFRDDSLKLRECSAITIETNNLEGSRALNKQARSTYRKTKLCRNWKHTGYCSFGMNCLFAHGEEELQVPGGAIQAEAAVTIENSTNAATSPASLLVEKEEEHVRKKRILGLKFSQINRIYGDWIDD* | 271 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr4g4103 | 270 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Mtr4g4103 | 270 | ProSiteProfiles | Zinc finger C3H1-type profile. | 180 | 208 | IPR000571 | GO:0046872 | |
| Mtr4g4103 | 270 | SMART | c3hfinal6 | 117 | 142 | IPR000571 | GO:0046872 | |
| Mtr4g4103 | 270 | SMART | c3hfinal6 | 180 | 207 | IPR000571 | GO:0046872 | |
| Mtr4g4103 | 270 | SMART | c3hfinal6 | 55 | 81 | IPR000571 | GO:0046872 | |
| Mtr4g4103 | 270 | Gene3D | - | 173 | 212 | - | - | |
| Mtr4g4103 | 270 | Pfam | RNA-binding, Nab2-type zinc finger | 121 | 140 | - | - | |
| Mtr4g4103 | 270 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 10 | 268 | IPR045877 | GO:0003729 | |
| Mtr4g4103 | 270 | Gene3D | - | 50 | 152 | - | - | |
| Mtr4g4103 | 270 | SUPERFAMILY | CCCH zinc finger | 179 | 211 | IPR036855 | GO:0046872 | |
| Mtr4g4103 | 270 | MobiDBLite | consensus disorder prediction | 12 | 30 | - | - | |
| Mtr4g4103 | 270 | SUPERFAMILY | CCCH zinc finger | 52 | 86 | IPR036855 | GO:0046872 | |
| Mtr4g4103 | 270 | ProSiteProfiles | Zinc finger C3H1-type profile. | 55 | 82 | IPR000571 | GO:0046872 | |
| Mtr4g4103 | 270 | ProSiteProfiles | Zinc finger C3H1-type profile. | 115 | 143 | IPR000571 | GO:0046872 | |
| Mtr4g4103 | 270 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 | 10 | 268 | - | - | |
| Mtr4g4103 | 270 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 56 | 80 | IPR000571 | GO:0046872 | |
| Mtr4g4103 | 270 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 182 | 207 | IPR000571 | GO:0046872 | |
| Mtr4g4103 | 270 | SUPERFAMILY | CCCH zinc finger | 117 | 142 | IPR036855 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr4g4103 | Mtr-Chr4 | 55001002 | 55003680 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Mtr4g4103 | zf-CCCH | 7.2e-08 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr4g4103 | - | - | mtr:MTR_4g113940 | 561.992 |