Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4102 ATGGCTTTTCCAGATGATATTCCAACCTCTAAGATAACACCACCGCAGTTCGCTTCATTGAACAACGATGACTTCAAAAGAGAAGGAACTTCTCATTCCAATGCATTGATATGCCCTCCTTCTGATGCATTGATATGCCCTCCTCCAAGGATGACCCTTCCTCAATCAAACAGATCAGACCACATTTTCTACAAAACACGGATTTGTACTAAGTTCATATTTGGTGCTTGTAGAAACGGAACAAATTGCAACTTTGCTCATGGGGCTGAAGAGATAAGGCAACCACCTCCAAATTCGCAGAAGCTAGTTGGTCCGTGCAACGAAGATAAAAAAATCATAAACAAGATGAAACTGTGCAAGAAGTATTGCAATGGGGAGAAATGTCCCTATGGAGATAAGTGTAAATTCCTTCATGAAGATCCTGCACAATTTAGGGGCACTTATCGGAAGACTAAGCTGTGTCTCAAGTGGAAGGATACGGGATATTGTTCCTTTGGAAAGAATTGTCACTTTGCTCATGGTGAAGAAGAGTTACAAGTTCCTGGCGGAGCCATTGAAGCTGAAGCTGCAGTTGCCATTGAAGCTGATGCTGCAATTACCATAGCAAAGGAAGAGGAGCAGGCAAAGAAGAAACGTATACTTGGGTTGAAATTCAGCCAGATCAATCGTATTTACGGTGATTGGATTGACGGTTGA 696 0.4224 MAFPDDIPTSKITPPQFASLNNDDFKREGTSHSNALICPPSDALICPPPRMTLPQSNRSDHIFYKTRICTKFIFGACRNGTNCNFAHGAEEIRQPPPNSQKLVGPCNEDKKIINKMKLCKKYCNGEKCPYGDKCKFLHEDPAQFRGTYRKTKLCLKWKDTGYCSFGKNCHFAHGEEELQVPGGAIEAEAAVAIEADAAITIAKEEEQAKKKRILGLKFSQINRIYGDWIDG* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4102 231 MobiDBLite consensus disorder prediction 1 25 - -
Mtr4g4102 231 Gene3D - 56 94 - -
Mtr4g4102 231 Gene3D - 144 180 - -
Mtr4g4102 231 Gene3D - 113 143 - -
Mtr4g4102 231 ProSiteProfiles Zinc finger C3H1-type profile. 113 141 IPR000571 GO:0046872
Mtr4g4102 231 PANTHER CCCH ZINC FINGER/TIS11-RELATED 146 229 IPR045877 GO:0003729
Mtr4g4102 231 PANTHER CCCH ZINC FINGER/TIS11-RELATED 18 143 IPR045877 GO:0003729
Mtr4g4102 231 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 146 229 - -
Mtr4g4102 231 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 18 143 - -
Mtr4g4102 231 SMART c3hfinal6 148 175 IPR000571 GO:0046872
Mtr4g4102 231 SMART c3hfinal6 113 140 IPR000571 GO:0046872
Mtr4g4102 231 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Mtr4g4102 231 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 175 IPR000571 GO:0046872
Mtr4g4102 231 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 64 88 IPR000571 GO:0046872
Mtr4g4102 231 SUPERFAMILY CCCH zinc finger 114 140 IPR036855 GO:0046872
Mtr4g4102 231 SUPERFAMILY CCCH zinc finger 148 179 IPR036855 GO:0046872
Mtr4g4102 231 SUPERFAMILY CCCH zinc finger 60 94 IPR036855 GO:0046872
Mtr4g4102 231 ProSiteProfiles Zinc finger C3H1-type profile. 148 176 IPR000571 GO:0046872
Mtr4g4102 231 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Mtr4g4102 231 Pfam CCCH-type zinc finger 117 138 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4102 Mtr-Chr4 54983897 54985614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4102 113 183 C3H Transcription Factor Family AT1G68200 35.526 4.28e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr4g4102 zf-CCCH 1.3e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4102 4 54983897 54985614 Mtr4g4102 4 54983897 54985614 ECH