Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4101 ATGGTTTTTCCTGACAATATTCCAACCTCTAAGATGTCACCGCCGCAATTTGCTACATCAAACAACGATATCGTTGAAGTGAGACCTCGATTTCCAATGAAAAATGAAAACTTTGAACAACATTCAACATTGTATCAACCCCATTCCCTCAAAAGGGCAAGAATTTCTGATAACAATCGTTCCAATGCATTGATATGCCTTCCTCCAAAGATGGTTCTGCCTCCATCAAACAGAGCAACCCACATTTTCTACAAGACTCGAATCTGTACTAAGTTCAGGTTTGGTACTTGTAGAAACGGTAAAGATTGCAACTTTGCTCATGGGGTTGAAGAACTAAGACAGCCACCAGGAAATTGGCTGGAGCTAGTTAGTCCTTGCAACGACGAACAGAAGCAGCTGAGAAATTGGGAGGAAGATCAAAAATTCATTCACAAGATGAAGCTATGCAGGATGTATTCCAATGGTGAGAAATGTTTCTTTGGTAGTAAGTGTAATTTTCGTCATGAGGATCCTGCTAAGTCTAGGGATCATTCTTGGAAGTCAGGAGAGTGTTCTTCTATAAGCATTGGGACTATTGGTTCTTCAAAATCATTTGGGGATGGCATTAGGGCTGTGAACAAGCCAGCTAGGGGCACTTATTGGAAGAATAATATGTGTTTCCGTTGGCAGCATCAAGGGAGCTGTCCCTTTGGGGAGGACTGTCACTTTTCTCATGGAGAAGCAGCTGCAGTTGCAATAGCAAATTCAACAAAAGCTATCAATCCAACTTCACGAAAAGCCTTAACAGGTTCTGGCAATGATGCATATGCACCTACCACCTTCCCTGCAAGACTTGTGGCAAAGGAAGAGGAGCAGGCTAAGAAGATGCATTTACTTTGGTTGAAATTAAACAAGATCAATCGTGTTTATGGTGATTGGATTGATGATTCACTTCTTGTTCTTCCCAACCTGCCAAGTGCAGTGGAGAACTGA 972 0.4198 MVFPDNIPTSKMSPPQFATSNNDIVEVRPRFPMKNENFEQHSTLYQPHSLKRARISDNNRSNALICLPPKMVLPPSNRATHIFYKTRICTKFRFGTCRNGKDCNFAHGVEELRQPPGNWLELVSPCNDEQKQLRNWEEDQKFIHKMKLCRMYSNGEKCFFGSKCNFRHEDPAKSRDHSWKSGECSSISIGTIGSSKSFGDGIRAVNKPARGTYWKNNMCFRWQHQGSCPFGEDCHFSHGEAAAVAIANSTKAINPTSRKALTGSGNDAYAPTTFPARLVAKEEEQAKKMHLLWLKLNKINRVYGDWIDDSLLVLPNLPSAVEN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4101 323 Pfam RNA-binding, Nab2-type zinc finger 149 168 - -
Mtr4g4101 323 Pfam RNA-binding, Nab2-type zinc finger 226 239 - -
Mtr4g4101 323 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Mtr4g4101 323 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Mtr4g4101 323 SMART c3hfinal6 215 240 IPR000571 GO:0046872
Mtr4g4101 323 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Mtr4g4101 323 SUPERFAMILY CCCH zinc finger 80 114 IPR036855 GO:0046872
Mtr4g4101 323 ProSiteProfiles Zinc finger C3H1-type profile. 213 241 IPR000571 GO:0046872
Mtr4g4101 323 SUPERFAMILY CCCH zinc finger 142 170 IPR036855 GO:0046872
Mtr4g4101 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Mtr4g4101 323 SUPERFAMILY CCCH zinc finger 212 241 IPR036855 GO:0046872
Mtr4g4101 323 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 312 IPR045877 GO:0003729
Mtr4g4101 323 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 312 - -
Mtr4g4101 323 Gene3D - 76 114 - -
Mtr4g4101 323 Gene3D - 139 172 - -
Mtr4g4101 323 Gene3D - 209 242 - -
Mtr4g4101 323 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4101 Mtr-Chr4 54974440 54976851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4101 85 168 C3H Transcription Factor Family AT1G68200 32.941 3.19e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr4g4101 zf-CCCH 9.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4101 - - mtr:MTR_4g113860 662.529