Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4086 ATGGTGCTTCCAATGACTATGTGTGGCCAAGAAGAACTTGAATTATCAAGAGATGGTAGTCACTATAGTCTCACAACCGGAATATTACCTTCTCTTGGTGCCAGAAGCAACCGGAGAGTTAAACTCAGACCCCTCATTATATCTCCCTATGATCGCCGTTACCGGATATGGGAAACTTTCCTTGTTACATTGGTTGTGTATACTGCATGGGTATCTCCATTTGAATTTGGATTCCTTAAGAAACCACAAAAACCCCTTTCTGTTACTGATAATATTGTCAATGGATTCTTTGCTATAGATATAGTTCTCACTTTCTTTGTGGCTTATATAGACAAAACTACCTATTTGTTCGTAGATAACCCGAAACAGATTGCTTGGAAATATGCAAAAACTTGGTTTGTACTTGATCTTATTTCCATCATTCCTTCTGAGCTTGTTGCACATATATCACCTGCTCCTATGCAAACCTATGGCCTATTCAACATGCTTAGGCTTTGGCGTCTTCGTAGAGTTAGCGCTATGTTTTCTCGGCTTGAGAAGGACAGAAACTATAACTATTTTTGGGTTCGGTGTGCAAAGCTTATTTGTGTTACTCTATTTGCTGTGCACTGTGCTGGATGCTTTTATTATCTTCTTGCCGCGCGTTATCATGATCCAGAAAAGACGTGGATTGGCGAATCAATGAAAGATTTCCTTCAGCAGTCCTTGTGGACAAGATATGTTACGACTATTTACTGGTCCATCACTACTTTAACAACAGTTGGTTATGGAGATTTGCATCCGGTGAATGAAAGAGAGATGATCTTTGTCATATTTTACATGCTCTTTAATCTAGGATTAACAGCATATCTGATTGGTAACATGACTAACTTAGTTGTCCATGGCACAAGTCGAACTAGAAAATTTAGGGATACCATACAAGCTGCATCAAGTTTTGCTCACAGGAACCAATTACCTCCTCGTTTACAAGATCAAATGCTTGCTCACTTGTGTTTGAAGTTTAGAACAGACTCGGAGGGCTTGCAGCAACAGGAGACACTCGAGTCTCTTCCTAAAGCCATCAGATCAAGCATTTCACATTATCTTTTCTATTCTCTGATGGATAAGGTTTACTTATTCAAGGGGGTTTCAAATGACTTGCTCTTTCAATTGGTATCTGAGATGAAGCCAGAGTATTTTCCACCTAAAGAAGATGTTATCTTACAAAATGAAGCTCCAACTGATTTTTACATTCTAGTGACTGGTGCTGTGGACTTGGTAGTTCTCAAAGGCGGGGTTGAACAGATTGTTGGTGAGGCGAAAACAGGAGAACTTTGTGGCGAGATTGGTGTACTTTGCTATAAGCCGCAACATTTTACAGTTAGAACCAAACGATTAAGTCAACTGTTGAGGCTGAACCGTACCACCTTCTTGAATATTGTTCAAGCTAATGTTGGCGACGGAACCATAATCATGAATAATCTTCTTCAGCATTTGAAAGAGCTGAACGATCCAATTATGGAGGGAGTTTTGGTAGAGACGGAGAACATGTTAGCTCGCGGTAGGATGGACTTACCAGTAAGTCTATGCTTTGCAGCAGAAAGAGGAGATGATTTGTTGTTACAACAATTGTTAAAACGAGGTTTGGAACCAAACGAATCCGACAATAATGGAAGGACAGCTTTGCATATAGCAGCATGTAAAGGAAAAGAAAACTGTGTTTTACTTCTGTTAGATTATGGGGCAAATCCTAACATTAGAGATTCGGATGGAAATGTAGCACTGTGGGAGGCTATACTTGGAGGACATGAATCAGTAACAAAACTTTTAGCAGAAAATGGTGCAACCTTGCAAATTGGGGATGTTGGTCAATATGCATGCACTGCAGTTGAACAAAACAATTTCAATTTATTGCAAGACATTATGCGTTACGGAGGAGACATCACGCTTCCAAATAACAATGTTGGAACCACGGCGTTACACGTGGCAGTCTCCGAAGACAATGTTGAAATTGTCAAATTCCTATTAGAACATGGTGCTAACATTGACAAACAAGATAAATATGGTTGGAGTCCAAGAGATTTAGCTGATCAACAAGGACATACCGAAATCAAAGCCATTTTTGAAGCCAAAGGAGAAGCTAATAGTAAGATTCAATCTTTTGTTTCTGTGCCTATTCCTGAGAGGCAGGATAGTAAAGTGAGGTACCTTGGTAGATTTACAAGTGAACCAACAATGCCTACACCTCAAGATGGATCATTTCATGGAAATGATGGTTCGTGGATTCAAAATCGACCAAGGCGTAAGAATAATAACTTTCATAATTCGCTCTTCGGGATAATGTCGGCGGCTACCAAAGGAGAAAATGACCAATTTTTTAGTGTTCAAACGAATAACAATGCAAGGAATGGTGTGAAGAGTGTTTTGCGTCCAACTAGAGTAACGATTAGTTGTCCTGAAAAGTGTGAGGTTGCTGGGAAGCTTGTGTTGCTACCTGAAAGTTTTAAAGAGTTACTTGAAATTGGATCTAAGAAATTTGGTATAGTTGCTACAAAGGTTGTTAGCAAAGATGGAGCTGAAATTGATGATATTGAGGTTATTAGAGATGGTGATCATCTTGTTTTTGTTGGTACTGGTGGGGTGCTAGATTCCAATTGTACAACACCCTCTAATGGTGTCAATTCATAA 2667 0.3948 MVLPMTMCGQEELELSRDGSHYSLTTGILPSLGARSNRRVKLRPLIISPYDRRYRIWETFLVTLVVYTAWVSPFEFGFLKKPQKPLSVTDNIVNGFFAIDIVLTFFVAYIDKTTYLFVDNPKQIAWKYAKTWFVLDLISIIPSELVAHISPAPMQTYGLFNMLRLWRLRRVSAMFSRLEKDRNYNYFWVRCAKLICVTLFAVHCAGCFYYLLAARYHDPEKTWIGESMKDFLQQSLWTRYVTTIYWSITTLTTVGYGDLHPVNEREMIFVIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLESLPKAIRSSISHYLFYSLMDKVYLFKGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLVVLKGGVEQIVGEAKTGELCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVETENMLARGRMDLPVSLCFAAERGDDLLLQQLLKRGLEPNESDNNGRTALHIAACKGKENCVLLLLDYGANPNIRDSDGNVALWEAILGGHESVTKLLAENGATLQIGDVGQYACTAVEQNNFNLLQDIMRYGGDITLPNNNVGTTALHVAVSEDNVEIVKFLLEHGANIDKQDKYGWSPRDLADQQGHTEIKAIFEAKGEANSKIQSFVSVPIPERQDSKVRYLGRFTSEPTMPTPQDGSFHGNDGSWIQNRPRRKNNNFHNSLFGIMSAATKGENDQFFSVQTNNNARNGVKSVLRPTRVTISCPEKCEVAGKLVLLPESFKELLEIGSKKFGIVATKVVSKDGAEIDDIEVIRDGDHLVFVGTGGVLDSNCTTPSNGVNS* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4086 888 ProSiteProfiles KHA domain profile. 806 886 IPR021789 -
Mtr4g4086 888 SUPERFAMILY Ankyrin repeat 521 702 IPR036770 -
Mtr4g4086 888 SUPERFAMILY Voltage-gated potassium channels 49 293 - -
Mtr4g4086 888 CDD CAP_ED 372 477 IPR000595 -
Mtr4g4086 888 Gene3D Jelly Rolls 337 497 IPR014710 -
Mtr4g4086 888 Pfam Ankyrin repeats (many copies) 649 689 IPR002110 GO:0005515
Mtr4g4086 888 ProSiteProfiles Ankyrin repeat profile. 583 615 IPR002110 GO:0005515
Mtr4g4086 888 SUPERFAMILY cAMP-binding domain-like 297 492 IPR018490 -
Mtr4g4086 888 Gene3D - 56 293 - -
Mtr4g4086 888 PANTHER POTASSIUM CHANNEL AKT1 11 870 IPR045319 GO:0005249|GO:0006813
Mtr4g4086 888 PRINTS EAG/ELK/ERG potassium channel family signature 67 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr4g4086 888 PRINTS EAG/ELK/ERG potassium channel family signature 90 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr4g4086 888 PRINTS EAG/ELK/ERG potassium channel family signature 101 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr4g4086 888 PRINTS EAG/ELK/ERG potassium channel family signature 240 257 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr4g4086 888 PRINTS EAG/ELK/ERG potassium channel family signature 266 277 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr4g4086 888 PRINTS EAG/ELK/ERG potassium channel family signature 284 293 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr4g4086 888 Pfam Ankyrin repeats (3 copies) 522 612 IPR002110 GO:0005515
Mtr4g4086 888 ProSiteProfiles Ankyrin repeat region circular profile. 550 581 - -
Mtr4g4086 888 PANTHER K+ TRANSPORTER 1-RELATED 11 870 - -
Mtr4g4086 888 ProSiteProfiles cAMP/cGMP binding motif profile. 372 474 IPR000595 -
Mtr4g4086 888 ProSiteProfiles Ankyrin repeat profile. 648 680 IPR002110 GO:0005515
Mtr4g4086 888 Gene3D - 518 703 IPR036770 -
Mtr4g4086 888 ProSiteProfiles Ankyrin repeat region circular profile. 648 680 - -
Mtr4g4086 888 SMART cnmp_10 372 489 IPR000595 -
Mtr4g4086 888 Pfam Ion transport protein 55 299 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr4g4086 888 ProSiteProfiles Ankyrin repeat profile. 550 582 IPR002110 GO:0005515
Mtr4g4086 888 Pfam Cyclic nucleotide-binding domain 391 476 IPR000595 -
Mtr4g4086 888 Pfam KHA, dimerisation domain of potassium ion channel 806 868 IPR021789 -
Mtr4g4086 888 SMART ANK_2a 517 546 IPR002110 GO:0005515
Mtr4g4086 888 SMART ANK_2a 583 612 IPR002110 GO:0005515
Mtr4g4086 888 SMART ANK_2a 648 677 IPR002110 GO:0005515
Mtr4g4086 888 SMART ANK_2a 550 579 IPR002110 GO:0005515
Mtr4g4086 888 PRINTS Ankyrin repeat signature 551 566 IPR002110 GO:0005515
Mtr4g4086 888 PRINTS Ankyrin repeat signature 664 678 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4086 Mtr-Chr4 54792257 54799079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4086 103 868 Ion Channels AT2G26650 69.961 0.0 1108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4086 K21867 - gmx:100819491 1447.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4086 4 54792257 54799079 Mtr4g4086 4 54792257 54799079 ECH