Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4085 ATGTTAGGGGAAGTTCAGCTACAACCTCCACCGATTCAGCAAAACCCTAGCGATTCCGATCCTTTACTTGCTCATCAAGATGAGGTTGAAGATGATGATTCCCATGGAAGTGGAAATTCTAATGAGATTAAGGATCAAGAAGATATTGAAGCTGGGTCACTACCTTGTTGTCGAATTTGCCTCGAATCCGATTCTGATCCAGAGGATGAGTTGATATCTCCATGCATGTGCAAAGGAACCCAACAGTTTGTTCATCGTTCATGTCTTGATCACTGGCGCTCAGTGAAGGAAGGATTTGCCTTTTCACACTGCACCACCTGCAAAGCCCAATTCCATCTTAGAGTTGAAACGTATGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTCGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTGTGATTGCTGCTATTGGTGGTTTTGCGTACATCATGGACAAAGATGGGAACTTCAGGAACTCATTTGATGATGGGTGGGATAGGATACTGTCAAGGCATCCTATACCATTTTATTATTGTATTGGAGTGGTGGCCTTCTTTGTTCTAATTGGATTTTTTGGCCTAATACTGCATTGCTCTTCCCTCAATAGCAATGACCCCAGAATGGCTGGTTGTCAAAACTGTTGCTATGGATGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAGGCATGCTTTGCCCTTGTAGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTGTAGCCTATGGCTTTCTTGCATCCACCATGGCAATTCAAAGAATTTGGCAGAGGCATTACCACATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTACAAGGCAGTTATTTCCCACCCAAGATAGACCCTGAACATGAAAGTCGCCTGAAAATGCTTAAGCTTTTGTGA 939 0.4302 MLGEVQLQPPPIQQNPSDSDPLLAHQDEVEDDDSHGSGNSNEIKDQEDIEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVETYEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGNFRNSFDDGWDRILSRHPIPFYYCIGVVAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGVAYGFLASTMAIQRIWQRHYHILTKRELTKEYIVEDLQGSYFPPKIDPEHESRLKMLKLL* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4085 312 SMART ringv_2 56 108 IPR011016 GO:0008270
Mtr4g4085 312 Pfam RING-variant domain 57 107 IPR011016 GO:0008270
Mtr4g4085 312 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 312 - -
Mtr4g4085 312 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 312 - -
Mtr4g4085 312 MobiDBLite consensus disorder prediction 28 45 - -
Mtr4g4085 312 CDD RING_CH-C4HC3_MARCH 57 108 - -
Mtr4g4085 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 121 IPR013083 -
Mtr4g4085 312 SUPERFAMILY RING/U-box 54 112 - -
Mtr4g4085 312 MobiDBLite consensus disorder prediction 1 45 - -
Mtr4g4085 312 ProSiteProfiles Zinc finger RING-CH-type profile. 49 114 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4085 Mtr-Chr4 54786376 54790722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4085 1 312 C3H Transcription Factor Family AT1G11020 79.128 3.17e-173 481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4085 4 54786376 54790722 Mtr4g4085 4 54786376 54790722 ECH