Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4074 ATGAAGGAAGAAACTGGACTTGAATCTCAACTAGCTTCATGTTTTTCTTCCTCTTGCAAAAGTCTCGTGTTTCCTTCTAGGCCTGACTATGGCAAACTTGGAACAAAGTGTGTTGTCAAAGCTAATTACTTCCTTGCAGATATTTCAGTATCTGACTTGAGCCATTACCATGTTGATATAACTCCTGAAGTTATATCTAGTAAAACAAGAAAAGCTATCATAGCTAAGTTAGTGAAGTTTCACCAGAACACTGAATTGGGAAAGAAGCTCCCTGTTTATGATGGTGCAGAGAATCTTTACACTGCCGGTTCGCTTCCTTTTACACACAAAGAGTTCAATATACTATTGATTGAGGATGATGAGGGTTTTGGTACTACAAGGGAAAGAAAATTTGAAGTTGCAATCAAGTTTTTAGCTCATGTTAGTATGCATCAGTTACATGAGCTTCTCAGTGGAAAAAAAGTGGAAACTCCACAAGAAGCTATCAATGCCATTGACATTGTATTGAAGGAGCTTGCATCTCATAGCTATGTATCATTTGGGAGCTTACACTATTCTCCGGATTTAAAAAAACCACATAAGCTGAGTGGTGGCTTGGAATCATGGAGCGGTTTCTATCAAAGTATAAGGCCTACTCAGATGGGATTATCGCTTAATGTTGACATGGCATCCACGGCGTTTATAGAACCGCTCCCTGTGATTGACATTGCAGCTCAAATTTTAGGAAAAGATGTGCACTCAAAGCCATTGTCAGATGCAGATCGCATCAAGATTAAGAAAGCCTTGAAAGGTGTGAAAGTAGAAGTTACATATAGAGGAAGTTTTAGAAGGAAGTACAGGATAACTGGATTAACATCACAACCTACAAGAGAACTCAGTTTCCCTTTGGGTGAGAAAATGAATATGATATCAGTAATTGATTACTTTCAAGAAATGTATGGATACAAAATCATGTATCCTCATTTACCTTGCCTTCAAGTAGGAAGTCAAAAGAAGGTGAACTATTTGCCTATGGAGGCATGCAAGATAGTTGGTGGACAGAGATATACAAAAGGGCTTAGTGAGAAGCAGATAACTTCTATGCTAAAAGTCTCATGTCAGAGACCACGCGAAAGGGAGAATGATATTCTTCAGACAATTCATCAAAATGATTATGATTGTAATCCTTATGCAAAGGAGTTTGGCATCAGCATCGGCAACGAACTTGCATCAGTCGAGGCTAGGGTTCTTCCTGCTCCTTGGTTGAAATATCATGAAACTGGAAGAGATAAAAAAATCTTGCCACAAGTTGGACAATGGAACATGACGAACAAGAAAGTTGTAAATGGAAGCAAAGTAAGATATTGGGCATGTATCAATTTCTCAAGAAGTGTCAAAGAAAAAACAGCTAGTGCATTTTGCCAACAGTTAGTTCAGACTTGCCAAAGTTTAGGCATGGAATTTAGTGAGGAACCAGTTATTCCTGTATATTCAGCAAGGCCAGATATGGTTAAGAAGGCCTTGAAGTATGTACATTCTTTTTCTCTAAACAAACTTGAGGGAAAAGAGCTAGAGTTGGTTGTTGCCATTCTTCCAGACAACAATGGCTCTCTCTATGGTGATCTCAAAAAAATCTGCGAAACAGATCTCGGGCTGATTTCCCAATGTTGTCTTACAAAATATGTATTCAAGATTAATAGACAGTATTTGTCAAATGTAGCACTAAAGATCAATGTCAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCTATAAGTTGCAGGATTCCATTGGTTAGTGACGTTCCAACAATAATTTTTGGAGCTGATGTATCTCATCCTGAATCTGGAGAGGACGTGTGTCCATCCATTGCGGCTGTTGTAGCCTCCCAAGACTGGCCAGAAGTGACAAAGTATGCAGGATTGGTATGTGCTCAGCCTCCTCGAGAAGAAATTATTAAAGATCTTTTCAAATGTTGGAACGATCCTCGTCGCGGTATCGTTTATGGTGGCATGATCAGAGAGCTCTTGCTCTCATTTCAGAAAGCAACTGGAAAGAAACCATGTAGGATATTATTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATATGAGCTCGATGCCATCCGTAAGGCTTGTGCATCTTTGGAGCCTGGTTACCAACCTCCGGTTACATTTGTCGTGGTTCAAAAACGGCATCACACTCGACTCTTCTCAGACAATCACAACGACAGAAACAGCATGGATAGGAGTGGGAATATCTTACCTGGAACTGTGGTGGACACAAAGATTTGTCATCCTACTGAGTTCGACTTCTACTTGTGTAGTCATGCTGGAGTTCAGGGTACAAGTAAACCAGCTCACTATCATGTTATATGGGACGACAACAAATTCAGTGCCGATGAGATTCAGTCCTTAACTAATAACTTGTGCTACACATATGCAAGATGTACGCGGTCTGTTTCTTTAGTGCCTCCTGCGTACTATGCTCATCTGGCTGCTTACAGAGCGCGATTCTACATGGAACCTGATGTCCATGAAAATGCAAAATCGCAAGTTACAGGATCGAAAGTCGAGTCAGTTCGACCACTACCAGCTCTAAAAGAGAAGGTTAAGAAAGTAATGTTTTACTGTTGA 2631 0.4021 MKEETGLESQLASCFSSSCKSLVFPSRPDYGKLGTKCVVKANYFLADISVSDLSHYHVDITPEVISSKTRKAIIAKLVKFHQNTELGKKLPVYDGAENLYTAGSLPFTHKEFNILLIEDDEGFGTTRERKFEVAIKFLAHVSMHQLHELLSGKKVETPQEAINAIDIVLKELASHSYVSFGSLHYSPDLKKPHKLSGGLESWSGFYQSIRPTQMGLSLNVDMASTAFIEPLPVIDIAAQILGKDVHSKPLSDADRIKIKKALKGVKVEVTYRGSFRRKYRITGLTSQPTRELSFPLGEKMNMISVIDYFQEMYGYKIMYPHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLSEKQITSMLKVSCQRPRERENDILQTIHQNDYDCNPYAKEFGISIGNELASVEARVLPAPWLKYHETGRDKKILPQVGQWNMTNKKVVNGSKVRYWACINFSRSVKEKTASAFCQQLVQTCQSLGMEFSEEPVIPVYSARPDMVKKALKYVHSFSLNKLEGKELELVVAILPDNNGSLYGDLKKICETDLGLISQCCLTKYVFKINRQYLSNVALKINVKMGGRNTVLLDAISCRIPLVSDVPTIIFGADVSHPESGEDVCPSIAAVVASQDWPEVTKYAGLVCAQPPREEIIKDLFKCWNDPRRGIVYGGMIRELLLSFQKATGKKPCRILFYRDGVSEGQFYQVLLYELDAIRKACASLEPGYQPPVTFVVVQKRHHTRLFSDNHNDRNSMDRSGNILPGTVVDTKICHPTEFDFYLCSHAGVQGTSKPAHYHVIWDDNKFSADEIQSLTNNLCYTYARCTRSVSLVPPAYYAHLAAYRARFYMEPDVHENAKSQVTGSKVESVRPLPALKEKVKKVMFYC* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4074 876 CDD Piwi_ago-like 389 839 IPR045246 -
Mtr4g4074 876 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 12 875 - -
Mtr4g4074 876 Pfam Mid domain of argonaute 428 505 IPR032473 -
Mtr4g4074 876 SMART DUF1785_2 178 230 IPR014811 -
Mtr4g4074 876 SMART PAZ_2_a_3 235 367 IPR003100 GO:0005515
Mtr4g4074 876 Gene3D paz domain 224 349 - -
Mtr4g4074 876 SUPERFAMILY Ribonuclease H-like 511 841 IPR012337 -
Mtr4g4074 876 Pfam Argonaute linker 2 domain 371 417 IPR032472 -
Mtr4g4074 876 Pfam Piwi domain 519 839 IPR003165 GO:0003676
Mtr4g4074 876 SUPERFAMILY PAZ domain 225 385 IPR036085 GO:0005515
Mtr4g4074 876 SMART Piwi_a_2 519 840 IPR003165 GO:0003676
Mtr4g4074 876 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Mtr4g4074 876 PANTHER PROTEIN ARGONAUTE 10 12 875 - -
Mtr4g4074 876 CDD PAZ_argonaute_like 230 344 - -
Mtr4g4074 876 ProSiteProfiles Piwi domain profile. 519 840 IPR003165 GO:0003676
Mtr4g4074 876 Pfam N-terminal domain of argonaute 35 169 IPR032474 -
Mtr4g4074 876 Pfam PAZ domain 257 362 IPR003100 GO:0005515
Mtr4g4074 876 Gene3D - 588 876 IPR036397 GO:0003676
Mtr4g4074 876 Pfam Argonaute linker 1 domain 186 229 IPR014811 -
Mtr4g4074 876 Gene3D - 409 582 - -
Mtr4g4074 876 ProSiteProfiles PAZ domain profile. 231 345 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4074 Mtr-Chr4 54632462 54642938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4074 24 876 Eukaryotic Initiation Factors Gene Family AT5G43810 70.452 0.0 1321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4074 K11593 - gmx:100808457 1467.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4074 4 54632462 54642938 Mtr4g4074 4 54632462 54642938 ECH