Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4073 ATGACACTGGACGATGATAGCTCCATTTACGTTGGCGGTCTTCCCTACGGCGCCACTGATGAAACTATTCGCACTGTCTTCAATTTGTATGGTGCCATTCTTGATGTCAAGATTATCAATGACCAACGTACAATTGGGAAATGCTATTGTTTTGTTACTTTCACAAACCCTAGGTCTGCAATTGATGCTATCAACGATATGAATGGAAGAACTATTAATGGCCGTGTGGTTAAAGTTAATGGGGTCAAGTCTCGTGGAGGTGGCAGTGGCAGATCAAATTTTGGGAGAGAAAGAGAACGTTATTATCATCATAATGATGAAAGGAATGGAGATTGGGATCGTGGCGGCAGAGATCGAGAGATTCGAGACCAAGATTATGATCGTGTCAGAGATAGAGAGATTCGAGACCAAGATTACGATCATGTTAATGAGAAAGATGGATACAGGAATAGAGGCAGTGATTGGTCCAGAGGTGGTGATTGGACTCGACAGCATCAGAGGTCTCGAGACCGTGATAGGTCCCGCGACCGTGATAGGTCTCGAGACCATGATAGGGATAGGGATAGAAGAGTCGAGCATATGCAAAATTATGATGGTCAAGCTAGAGAAAGCATGTTAGTCCGTGATAGGTCCCGAGACCGTGACCGGGATAGGGATAGAAGAGTTGAACACATGCTAGATTATGATGGTCAAGCTAGAGCAAGTATGTTAGGTCGTGATAGATCCCGAGACCATGATAGGGATAGGGATAGAAGAGTTGAACATATGCAAGATTATGATGATCAAGCTAGAGAAAGCGTGTTAGACCGTGATAGGTCCCGAGACCGTGACCGTGACAGGGGTATAAAAGTTGAGCATTTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGCTAGATCGTGATGGGTCCCGAGACCGTGACAGAGATAGGAGTAGAAGAGTTGAGCATTTGCAAGGCTATGATGATCAAGCTAGAGAAAGCATGTTAGACCGCGATGGGTCCCGAGACCGTGACATCATGGTTAGGGATAGAAGAGTTGAACATTTGCAAGATTATGATGATCATAGAGAAAGCATGTTAGATGATGATTGGAATCGTGATGGTGATAGGGCTGAAAATGAACTAGAAAACAGCAGGGTACAGGGTGGAGATGTCGATAAAGACCGTACCTTAGATGTGGATCCAGACAAAAAGAATGATAGGATTAGTGATCCTGATAAAAGTTTTGACGAACATAAAAAAGAACAACCGAGGAGAAACATCGATTTGAATGTGACAAATCAAAATAGTCCATCAGATTCTAATGGGGACCACAATGATGAGGTAGAAGATGAATTAGAGAGGTCAATTCAACTGCTTGATCAACTAAAAAAGGAGGTTTCTAAGCTGGAAGAGGGATTGGAAGAAAGAAGACTTAATGTTATGGAGTTACAAAAGCACTCTAAGAAAATGGAGGATGCAGTGATTACTGCAAAGAAAAAATCTTTATATCGCCAGATGCAGTTGACCAAGCTGCATGAATGTTTTCTTCAAGTGCACGATTCCACGGAAAGACTTAAAACCAGTGAAAAAGAACTCCAGGCTCTAGTTGAATCAATATTGCTCGAGAGTGACGGTGATGGTGGTCTTGGACAACTTACAAATGGAAGTCTTGATGGTAGATAG 1668 0.4257 MTLDDDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAINDMNGRTINGRVVKVNGVKSRGGGSGRSNFGRERERYYHHNDERNGDWDRGGRDREIRDQDYDRVRDREIRDQDYDHVNEKDGYRNRGSDWSRGGDWTRQHQRSRDRDRSRDRDRSRDHDRDRDRRVEHMQNYDGQARESMLVRDRSRDRDRDRDRRVEHMLDYDGQARASMLGRDRSRDHDRDRDRRVEHMQDYDDQARESVLDRDRSRDRDRDRGIKVEHLQDYDDQARESMLDRDGSRDRDRDRSRRVEHLQGYDDQARESMLDRDGSRDRDIMVRDRRVEHLQDYDDHRESMLDDDWNRDGDRAENELENSRVQGGDVDKDRTLDVDPDKKNDRISDPDKSFDEHKKEQPRRNIDLNVTNQNSPSDSNGDHNDEVEDELERSIQLLDQLKKEVSKLEEGLEERRLNVMELQKHSKKMEDAVITAKKKSLYRQMQLTKLHECFLQVHDSTERLKTSEKELQALVESILLESDGDGGLGQLTNGSLDGR* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4073 555 Gene3D - 2 99 IPR012677 -
Mtr4g4073 555 MobiDBLite consensus disorder prediction 92 118 - -
Mtr4g4073 555 CDD RRM_SF 9 80 - -
Mtr4g4073 555 MobiDBLite consensus disorder prediction 81 118 - -
Mtr4g4073 555 Coils Coil 440 474 - -
Mtr4g4073 555 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Mtr4g4073 555 MobiDBLite consensus disorder prediction 422 436 - -
Mtr4g4073 555 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 264 - -
Mtr4g4073 555 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 263 551 - -
Mtr4g4073 555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Mtr4g4073 555 MobiDBLite consensus disorder prediction 141 334 - -
Mtr4g4073 555 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 264 - -
Mtr4g4073 555 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 263 551 - -
Mtr4g4073 555 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Mtr4g4073 555 MobiDBLite consensus disorder prediction 359 421 - -
Mtr4g4073 555 SMART rrm2_1 8 80 IPR003954 GO:0003676
Mtr4g4073 555 SMART rrm1_1 8 80 IPR000504 GO:0003723
Mtr4g4073 555 MobiDBLite consensus disorder prediction 359 446 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4073 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 32.877 6.07e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4073 - - mtr:MTR_4g113150 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4073 4 54619043 54623108 Mtr4g4073 4 54619043 54623108 ECH