Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4072 ATGGCTTCATCATCTGAACTAGGCTTGGATTGCAAGCCACATAGCTACTCCATGTTACTGAAATCATTTGGAGAACAAAGTGATCAAAGCTACAAACTCGAAGAATTTGTTTCTCGCTTAGAAGAAGAACGTCTCAAAATCGATGCTTTCAAACGTGAGCTTCCTCTCTGCATGCAACTTCTCACAAACGCAATGGAAGCATCGAAGCAGCAACTTCAAGCGTTTAGATCGAATCAAGGAGCAAAACCAATTCTAGAAGAGTTCATACCAGTGAAGCAATTAACATCATCAGAAACATTGGAAAAGACAACAAATAATAATGTATGTGATATGGCAAATTGGATGACAAGTGCACAATTATGGAGCCAAACAAGTGAATTAGGAACAAAACAACAACAAAATTCAACAAAAGAAAATAATGATAACAATAACAATATTGGATTTAACATTAGTCCTAAACATAGAAATGGTGGAGCTTTTCTCCCATTCTCAAAAGAAAGAAATAACTCATCTTGTCAAGGTCAGGGTCTTCCTGAACTAGCACTAGCTTCTACTCAAAAAGAAGAGGATAAGAAACATGTTGGAGAAGCAGAAAAAGGGAAAACAAATTCAGGGAATGAAGTTGATAATCAAGGAAAAGGAAGTCCAGTAGCATCATCACAAACTCAGACAACAAGCAATAATTCAAACCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCAGACTTGCACCGTAGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCAACACCAAAACAGATAAGGGAGTTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATCTGCAGAAATATAGGCTTCACACAAGAAGACCAAGTCCAAGTGCACAAAATGGTGCACCAGCAGCACAGTTAGTGGTTTTAGGAGGAATATGGGTCCCACCAGAATATGCAACTGCAGCTCATGCAGGAGGAACACCTACTCTCTATGGTGGTCATCCTACTTCTCATCATCTCACTCTGCCACATTACTGCACTGCACCAGGCCAAGATCAGTACTACACTACTGCACCGCCACCGCAGCAGCTACTTCCGCCGCCTCATCACATGCACCATGTCTACAAGACCACGCCACACGGACAAGGTTCACCGGAGACATGTGGAGACGGGTTGGATAGTATCGAAAATGGGAAGACATCGGAGAGTAGTAGCTGGAAAGAGGGGAGTTCTGAGGATGAAGGGGAAAGGAAAGGGTTTGTTGAAGAGAGCAATGGGAGTGAAATCACTCTCAAATTTTAA 1305 0.4161 MASSSELGLDCKPHSYSMLLKSFGEQSDQSYKLEEFVSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQAFRSNQGAKPILEEFIPVKQLTSSETLEKTTNNNVCDMANWMTSAQLWSQTSELGTKQQQNSTKENNDNNNNIGFNISPKHRNGGAFLPFSKERNNSSCQGQGLPELALASTQKEEDKKHVGEAEKGKTNSGNEVDNQGKGSPVASSQTQTTSNNSNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSAQNGAPAAQLVVLGGIWVPPEYATAAHAGGTPTLYGGHPTSHHLTLPHYCTAPGQDQYYTTAPPPQQLLPPPHHMHHVYKTTPHGQGSPETCGDGLDSIENGKTSESSSWKEGSSEDEGERKGFVEESNGSEITLKF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4072 434 Coils Coil 33 53 - -
Mtr4g4072 434 Gene3D - 234 292 - -
Mtr4g4072 434 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 235 290 IPR006447 GO:0003677
Mtr4g4072 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 292 IPR017930 -
Mtr4g4072 434 MobiDBLite consensus disorder prediction 407 424 - -
Mtr4g4072 434 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 434 - -
Mtr4g4072 434 MobiDBLite consensus disorder prediction 356 434 - -
Mtr4g4072 434 MobiDBLite consensus disorder prediction 184 203 - -
Mtr4g4072 434 MobiDBLite consensus disorder prediction 122 239 - -
Mtr4g4072 434 Coils Coil 58 78 - -
Mtr4g4072 434 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 434 IPR044787 GO:0003700|GO:0006355
Mtr4g4072 434 MobiDBLite consensus disorder prediction 204 235 - -
Mtr4g4072 434 MobiDBLite consensus disorder prediction 163 180 - -
Mtr4g4072 434 SUPERFAMILY Homeodomain-like 232 293 IPR009057 -
Mtr4g4072 434 MobiDBLite consensus disorder prediction 122 151 - -
Mtr4g4072 434 Pfam Myb-like DNA-binding domain 237 288 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4072 Mtr-Chr4 54613709 54616370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4072 1 434 G2-like Transcription Factor Family AT2G03500 51.502 6.48e-120 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr4g4072 Myb_DNA-binding 9.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4072 - - gmx:100807925 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4072 4 54613709 54616370 Mtr4g4072 4 54613709 54616370 ECH