Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4069 ATGTCTCAATCCAAATACGATGAACCTGATAAAGCGTTAGATGCTTTTATCTACGATTACCTCGTGAAGAATCAATTGTATGAAACTGCAAGAATATTTCATGATGAAGGCAATGTTGAACAGAACATTGTTATGGATGCACCTGGTGGTTCACTCTTCGAGTGGTGGTCTGTTTTCTGGGAATTGTTTATGGCCAAACAAGGTTTTTCACACTCAGAACCAGCATTATCTTACCTTAAGGCTCAAGAAATGCGGAAGCAAGAAGAAGAAATAGAGAGAATCCAGTTCATATTGCAGAGCCCTGCTCAGCTTCAGCAATATGGGGCTGAAACTCAAGAAAGTGTTAATGGCATTGTTCTCTGTCCCATAAACAATGCTCCTATGGTGAGGCAGAACCGGGTTACTCCTAATACAATGGCAACAAAACTAAATGAGGACAGGTTGGCATCTCCCCTTCAGGGAAATGCTTTAGATGACAGGACCTTTAAGATAATGAATGCTTATACCCGCGGTCAGCTTCCAATGGAGGATTGTGCCATGTTGTTCAACGAAATAACACCAATAACTGGTGGACAACCTTCAGGACAAACATTGGCCAGTGCACTTAGCATTTTACAAGAGAAACTTCGACAGGATCAAAATCAGAACCAGCAACTTCCAGGGTTTACACAAGCCATGCACAGTGGCATGAGTGCAATGATGAGGTCTCGAGCTGTTGTTTCAGAAGGATCCAGTTACAGTGTTCATCATGGTTCAAATCAAGGTGGTAGCGACTTGACTCTGAAAGGGTGGCCTTTAGCAGGACTGGATGAGCATCATGCGGAACTTCTTCATAAGCATAATTTGATTCTGCCTTCACAATCTTCCAATCAATTTTCACCACGGCAGCAACTTATGTTTCAGGCACAGCAGGATTTAGTTAATCCATTTGTCAGTGGTTTTGATGGCAAAAGACCAAGTGTGCTTGCCAATAATCAAAATATGGTTCCTTGGAACGATGGCCAATCAAATTCTGTAGGTGGTTCCATTCCCAATATTGTAACACCTGCACAAATTGGTTTCCCTGAATTGCCTCATCTGAACTTAGATATGACCCATAAGGCTTCCAAAAGTCAAGTCGAACGGAAGCAAAAACAAAAAGTAGGATCATGTTCAGGTCTTGCCAATAGCTCTGGAACTGCAAACACAATGGGATCATCTTCTGGTTCATCCTCTACACCAACTATGCAGTCACGACTGCCATCTTGGCAACAGAATGGTTTGGGCTCACTTGCATCAACACAGAATCAATTGGCTCATATGGACCATCTCAAGAGCAACGGATCTTTGGCGGACAATTTTGAGTCACTCTCATCTCTTGCTGATGCAGACCATAATGGACGAGTTGACAGAGGAGTCTCATTTAATGAGATGAAGCATATATTGGCTAGTTCAGATAAAGTTGACTGTTGTCACTTCTCCTCGGATGGAAAACTATTTGTTACTGGTGGTCGTGATAAAAAGGCTTCTCTATGGTGCACAAAATTGTTTAACCTGAAATCTACGCTTGAAGAGCACACTCAACGGATAACTGATGTTAGATTTAGCCCAAGCATGTTCTATGTTGCTACGTCCTCAGCCGATAAAACTGTAAAGGTTTGGGATGTTAATAATCTTGGTCATTCTCTTCGGACATTTACAGGGAATACAGCTGTGCTGTCACTAGACTTTCATCCAAGTAAACATGGCCTTATTTGTTCTTGTGATAATAAGGAGATAAGATTTTGGAATATTGCAAATGGTAGTTGTATTGGGATTTTCAAGGGTGGTGTAACTCAGGTGAGATTTCAACCTGGTTTGGGAAAGGTTCTTGCAGCAGCAGTAAATAATCTAATACTCATGTTTGACACAGAAACTCTGAGTTGCAGATTTAAATTGCAGGGCCACATGAGCCTTGTTCGTTCAGTGTGCTGGCACTCTTCTGGAAATTATATGGCATCTGTTTGTAATGATCTGGTCAAACTCTGGGCCATTGGATCTGATTGTAGAGGGGCATGTATTACGCAATTGAATGCAACTGAGAGCAAATTCAAGACCTGCGTTTTCCATCCGAGCCACAATATTTTGATCATTTCCTGCAGTGAGTCGCTTATGCTCTGGGACTATGTGGAGAGCAAAAAACTTATTGTGCCTGCACACGACAAGCTTGTATCTGCATTGGCAGTGTCAGATGTTACTGGATTGGTGGCTTCAGTTAGTCATGATAGGACTTTCAAGATCTGGAAGTGA 2268 0.4202 MSQSKYDEPDKALDAFIYDYLVKNQLYETARIFHDEGNVEQNIVMDAPGGSLFEWWSVFWELFMAKQGFSHSEPALSYLKAQEMRKQEEEIERIQFILQSPAQLQQYGAETQESVNGIVLCPINNAPMVRQNRVTPNTMATKLNEDRLASPLQGNALDDRTFKIMNAYTRGQLPMEDCAMLFNEITPITGGQPSGQTLASALSILQEKLRQDQNQNQQLPGFTQAMHSGMSAMMRSRAVVSEGSSYSVHHGSNQGGSDLTLKGWPLAGLDEHHAELLHKHNLILPSQSSNQFSPRQQLMFQAQQDLVNPFVSGFDGKRPSVLANNQNMVPWNDGQSNSVGGSIPNIVTPAQIGFPELPHLNLDMTHKASKSQVERKQKQKVGSCSGLANSSGTANTMGSSSGSSSTPTMQSRLPSWQQNGLGSLASTQNQLAHMDHLKSNGSLADNFESLSSLADADHNGRVDRGVSFNEMKHILASSDKVDCCHFSSDGKLFVTGGRDKKASLWCTKLFNLKSTLEEHTQRITDVRFSPSMFYVATSSADKTVKVWDVNNLGHSLRTFTGNTAVLSLDFHPSKHGLICSCDNKEIRFWNIANGSCIGIFKGGVTQVRFQPGLGKVLAAAVNNLILMFDTETLSCRFKLQGHMSLVRSVCWHSSGNYMASVCNDLVKLWAIGSDCRGACITQLNATESKFKTCVFHPSHNILIISCSESLMLWDYVESKKLIVPAHDKLVSALAVSDVTGLVASVSHDRTFKIWK* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4069 755 SMART WD40_4 593 629 IPR001680 GO:0005515
Mtr4g4069 755 SMART WD40_4 716 755 IPR001680 GO:0005515
Mtr4g4069 755 SMART WD40_4 509 548 IPR001680 GO:0005515
Mtr4g4069 755 SMART WD40_4 467 506 IPR001680 GO:0005515
Mtr4g4069 755 SMART WD40_4 632 670 IPR001680 GO:0005515
Mtr4g4069 755 SMART WD40_4 552 590 IPR001680 GO:0005515
Mtr4g4069 755 SMART WD40_4 676 714 IPR001680 GO:0005515
Mtr4g4069 755 MobiDBLite consensus disorder prediction 378 421 - -
Mtr4g4069 755 Pfam LisH 13 36 IPR006594 GO:0005515
Mtr4g4069 755 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 516 551 - -
Mtr4g4069 755 Pfam WD domain, G-beta repeat 477 505 IPR001680 GO:0005515
Mtr4g4069 755 Pfam WD domain, G-beta repeat 555 590 IPR001680 GO:0005515
Mtr4g4069 755 Pfam WD domain, G-beta repeat 635 669 IPR001680 GO:0005515
Mtr4g4069 755 Pfam WD domain, G-beta repeat 512 548 IPR001680 GO:0005515
Mtr4g4069 755 CDD WD40 470 755 - -
Mtr4g4069 755 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 6 371 IPR044716 GO:0003714
Mtr4g4069 755 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 368 755 IPR044716 GO:0003714
Mtr4g4069 755 MobiDBLite consensus disorder prediction 367 421 - -
Mtr4g4069 755 PANTHER LISH-SSDP-WD40 6 371 - -
Mtr4g4069 755 PANTHER LISH-SSDP-WD40 368 755 - -
Mtr4g4069 755 SUPERFAMILY WD40 repeat-like 468 755 IPR036322 GO:0005515
Mtr4g4069 755 Gene3D - 603 755 IPR015943 GO:0005515
Mtr4g4069 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 474 505 IPR001680 GO:0005515
Mtr4g4069 755 ProSitePatterns Trp-Asp (WD) repeats signature. 535 549 IPR019775 -
Mtr4g4069 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 723 755 IPR001680 GO:0005515
Mtr4g4069 755 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Mtr4g4069 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 516 551 IPR001680 GO:0005515
Mtr4g4069 755 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 723 755 - -
Mtr4g4069 755 Gene3D - 364 602 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4069 Mtr-Chr4 54566365 54574533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4069 470 715 Miscellaneous Gene Families AT5G08390 25.296 1.24e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mtr4g4069 WD40 0.0042 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4069 - - mtr:MTR_4g113080 1480.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4069 4 54566365 54574533 Mtr4g4069 4 54566365 54574533 ECH