Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4058 ATGTCATCAAGTGGAGCCATTTGGAGCTATGAAGAAGAAAAAGCATTTGAGAATGCTATAGCCATGCATTGGATTGAAAAAGAAGATTCAAAAGAACAATGGGAAAAGATTGCTTCATCTGTCCCCAACAAAAGTATGGAACAAGTGAAACAACATTACCAAGTATTGGTAGATGATGTTAGTGCAATTGAGGAAGGTCATGTATCATTGCCAAATTATGCTAATGAATTAGAAACTATTAATTCTTCAAACAAAGATTCTTCCAAGGCCACCACAAGTTCAGATAAAAGATCAAGTTGTAATTTTGGAAGTGGGTTTTCTGGTTTAGGACATGACTCCACCCACCATAGTAGTGGTAAAGGTGGATTGTCAAGGTCATCATCATCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAAGAGCATAGGTTATTTTTACTTGGTTTAGACAAATTTGGAAAAGGAGATTGGAGGAGCATATCAAGGAATTTTGTGATATCTAGGACACCAACACAAGTAGCAAGTCATGCACAAAAGTATTTCATTAGGTTGAATTCAATGAATAGAGATAGAAGAAGGTCTAGTATCCATGATATTACTAGTGTTAACAATGGAGATGTTGCTAGTAATCATCAAGCACCAATAACAGGTCAACATGGTAACACACTCCCTTCAAATACAATGGGTTTAGGACAATCAATGAAGCATAGAGTTCAGCCTCATCATCCTCCTGGTGGTTTAGGAATGTATGGAGCACCAGTTGGACATCCTTTTGTTGCTCCTCCTGCTCATATGGCATCTGCAGTTGGGACACCTGTTATGCTTCCACATCATCCTCATCATCATCCACCTTATGTTGTACCTCTTGCTTACCCTATGGCACCTCCAACAATGCACCAATGA 912 0.3871 MSSSGAIWSYEEEKAFENAIAMHWIEKEDSKEQWEKIASSVPNKSMEQVKQHYQVLVDDVSAIEEGHVSLPNYANELETINSSNKDSSKATTSSDKRSSCNFGSGFSGLGHDSTHHSSGKGGLSRSSSSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNHQAPITGQHGNTLPSNTMGLGQSMKHRVQPHHPPGGLGMYGAPVGHPFVAPPAHMASAVGTPVMLPHHPHHHPPYVVPLAYPMAPPTMHQ* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4058 303 MobiDBLite consensus disorder prediction 106 128 - -
Mtr4g4058 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 188 IPR017930 -
Mtr4g4058 303 PANTHER TRANSCRIPTION FACTOR KUA1 1 302 - -
Mtr4g4058 303 Gene3D - 138 190 - -
Mtr4g4058 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 136 186 IPR006447 GO:0003677
Mtr4g4058 303 MobiDBLite consensus disorder prediction 106 138 - -
Mtr4g4058 303 SUPERFAMILY Homeodomain-like 134 189 IPR009057 -
Mtr4g4058 303 Gene3D - 1 70 - -
Mtr4g4058 303 SMART sant 136 186 IPR001005 -
Mtr4g4058 303 SMART sant 4 59 IPR001005 -
Mtr4g4058 303 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
Mtr4g4058 303 CDD SANT 8 57 IPR001005 -
Mtr4g4058 303 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
Mtr4g4058 303 ProSiteProfiles SANT domain profile. 3 53 IPR017884 -
Mtr4g4058 303 CDD SANT 139 184 IPR001005 -
Mtr4g4058 303 PANTHER TRANSCRIPTION FACTOR MYBS1 1 302 - -
Mtr4g4058 303 MobiDBLite consensus disorder prediction 79 98 - -
Mtr4g4058 303 ProSiteProfiles SANT domain profile. 140 188 IPR017884 -
Mtr4g4058 303 Pfam Myb-like DNA-binding domain 8 56 IPR001005 -
Mtr4g4058 303 Pfam Myb-like DNA-binding domain 139 184 IPR001005 -
Mtr4g4058 303 SUPERFAMILY Homeodomain-like 7 61 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4058 Mtr-Chr4 54435654 54437480 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g4058 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4058 - - gmx:778049 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4058 4 54435654 54437480 Mtr4g4058 4 54435654 54437480 ECH