Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4055 ATGTATTCTTCAAATAGTTCCCTCAATGGAAATAACCTAGCATTTTCCTCTAAATCACCTTTTTGTTCATTTGAAAGCAACTCAACTTCATCAAAAGATATTGAAAACAGTCATTCCCCCTTTCCTCTTCCCAGTCCTTTCTCTTTCTTTCAATTCCCTAATTATCCTGATGATGATATTGATCCCTTTCAAGACAGCCATCAAATCTTCCTCCAACAACATGATGTTGATTTCCAACTTCATCATCCACCTGTTGTCATGAATAACAACAGTACTGATCATCATCAGCGGCCTTCCAATTCAACAATCAAAGCTAACAACAATCTTCTTCCTGCAGCTGCTGGTAAAGGCAAAACTGTAGTGGATCAGCAGATCCAAAGAAAAAGATCTAGCAAGAGAGACCGACACAGCAAGATCAAAACCGCGAAAGGACTAAGAGATCGGAGAATGAGATTGTCACTTGAAGTTGCAAAGAGGTTTTTTGGTCTTCAAGATATGTTAGGCTTTGAAAAAGCAAGCAAAACAGTGGACTGGTTGCTCAACCAATCCAAACTTGAGATCAAACTCCTTGCAAGAGAGAAAAATGTTAATTTTCCTACTAAGAGTGCATCTTCAACTTCTGAATGTACTGAAGGAGTTTCAAGCTTGGATAATGAAGTTGGAAATCAAGAAGAACCACAACAACAAAAACTTGTTATGAAGAGAAGAAATAGTACTAACAAGGTTTGTAGAAAGAGTGCATTCAATTCTATAGGTAGAGAAAAAGCAAGAGAAAGGGCAAGAGAAAGGACAAAAGAAAAAAGGAAGGCTAGAACATCACTAGTTGATGAATCAAATTCAAAGCAATACAATGAAGAAGGAATAAAAACTAACCTCATTTGGAACCCCTTTGAAAGTGTGGAAGAATCTGCAGGTACACATCAGAGTACTCAAGGTGTGACTCATCCTTCCTTTGATCATGTGAAGCTGATTGATGAGGCTGAAGTAGAAACAAGCTCTCAAAAAGCAAAGGAACAACATTCAGATGAAGATAATTCTTTGTTCATTATGAGCAAATGGAGTCCACCTATGATGTTCAATTCTCTCAATAACCTTCAACAACATCAATTTGAACAATTTCACCAATCCATGGAAAAACCTTGGGAAGCATACAACAACCGCATTTAA 1167 0.3736 MYSSNSSLNGNNLAFSSKSPFCSFESNSTSSKDIENSHSPFPLPSPFSFFQFPNYPDDDIDPFQDSHQIFLQQHDVDFQLHHPPVVMNNNSTDHHQRPSNSTIKANNNLLPAAAGKGKTVVDQQIQRKRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKLEIKLLAREKNVNFPTKSASSTSECTEGVSSLDNEVGNQEEPQQQKLVMKRRNSTNKVCRKSAFNSIGREKARERARERTKEKRKARTSLVDESNSKQYNEEGIKTNLIWNPFESVEESAGTHQSTQGVTHPSFDHVKLIDEAEVETSSQKAKEQHSDEDNSLFIMSKWSPPMMFNSLNNLQQHQFEQFHQSMEKPWEAYNNRI* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4055 388 MobiDBLite consensus disorder prediction 200 246 - -
Mtr4g4055 388 PANTHER TRANSCRIPTION FACTOR TCP18 46 361 - -
Mtr4g4055 388 MobiDBLite consensus disorder prediction 200 279 - -
Mtr4g4055 388 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 46 361 IPR005333 GO:0003700
Mtr4g4055 388 ProSiteProfiles R domain profile. 250 267 IPR017888 -
Mtr4g4055 388 Pfam TCP family transcription factor 131 269 IPR017887 -
Mtr4g4055 388 ProSiteProfiles TCP domain profile. 132 190 IPR017887 -
Mtr4g4055 388 MobiDBLite consensus disorder prediction 248 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4055 Mtr-Chr4 54389532 54391168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4055 1 264 TCP Transcription Factor Family AT3G18550 32.039 5.30e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Mtr4g4055 TCP 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4055 - - gmx:100803669 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4055 4 54389532 54391168 Mtr4g4055 4 54389532 54391168 ECH