LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g4037	ATGACAGTATTTCCCACACACCTATATAACCAGCATTGGTGTCATTCCTTTTCCACTCATTCTGTCACATCTATCTGTGTAATTTCATTTCTTCCCACATACTCTCTTTGCTTCCCTACCATGTCTGCCATTGATGTCATTGGAACCAAGGTCGGAGAAGTCAACAACAATGGTGTGCATACCTTTCTCAACAAACTCTCCAATGCTGCCCCTGATACCAAGATCAAAGTTAGGGTAGCACGCATGTGGGACACGCTGAATATAACAAAAAAAAAGGAAATAATTAGTACAGATATGGTGCTAATTGATGAGAAGGCAAATTGCATTCATGCTACAATACCAAGGAGGTTCTCACCTTCATTGAAGAAAGTCTTGCAAGAAGGCAAGATATATGTAATTTCACACTTTGAGGTCTCAAAAAACAAGGAGAAATATGCTGTGGTTGAAAACAATCCCTCCATGCTTAGTTTCTATGGTGACGCAATTGTGACTGAGGAGGGCTCGGATGACAACACAATCCCTCGCTATATCTTTGAATTTGTTAATTTCAATGATCTTATCAAACGTTGCGGGAAAGAGGTGTTGGCAGATGTAATTGGATTTATAATTGATGTGGATCCAATTGAGGAGAAAACAACCGTCAATGGGAAAGTCGACATGTTGTCACTTCATTTGGGGGATGGCAGTGGGAATGTCTTGAAGGTAACGCTATGGGATGACTATGCTCCGATGTTTAATCAAAAACTGATAGATCAAATGCATGCTACTCCTAAGCCAAATGTGGCAATTTTTACCTCCACTTTGGTAAAACAATACCAAGGTGAGCTTTATGTTTCGTCTTCAAGATCCACAACAATTTATATCAACATAGACACCCCTGAAGTTGCTGATCTAATTTTGTCGTCCAAGGGGAAAAACAGTGTTCTGAAAACAACTGAAACTTTGTCTTTAACTAATGTTGATGTGAAGACCATATCTGAGCTTTTATCCATGGCAGTTTCGGGAGTTTATCAGGGTGATGTTGTCTACAATTGTGTTGCAACAGTTGATGACATCCTGCTAAAAAATGGGTTGTATTATGTTTCTTGCCCTCATTGTAGGAAAACTGTGAGTTCCACTGAGACAGACTTCAATTGTGAGCATTGTACTAAAAAGGTCGACTATCCAAAGATTAGGTACCGTTTGGAACTTCAAGTCAACGACTCTACGGAATCAACAATATTTGTGTTGTTTGCCGAAGTTGCTGAACAATTGGCACAACTAAAGCTAGATGACCTCACCCCGGATTTAGAAAATACTGGACGTGACTCTGATCTGCCTAAACAGCTCCAGCATATCATTGGTTCAAAGCATATTTTTCAAGTTAAGCTGAGCTCTTACTTTGAACGTCGTGGAGTACAAAGCTTCACTGCACATAAGATTCTGAAGCCAGTTGTTAAGATTGAGAAAGAAGACAACATTGCCACTGCGTGTTCTTCCTCAAGTGGATCTCTTACCATTGAAATACCAGATTTGCCGAAGAAGAGGAGAAAATTAATATTGCACTCCAACAAATCAGGTGATAAGGACCAGAATGAAGATGTGGAAGATTTAGAAGATTGA	1602	0.397	MTVFPTHLYNQHWCHSFSTHSVTSICVISFLPTYSLCFPTMSAIDVIGTKVGEVNNNGVHTFLNKLSNAAPDTKIKVRVARMWDTLNITKKKEIISTDMVLIDEKANCIHATIPRRFSPSLKKVLQEGKIYVISHFEVSKNKEKYAVVENNPSMLSFYGDAIVTEEGSDDNTIPRYIFEFVNFNDLIKRCGKEVLADVIGFIIDVDPIEEKTTVNGKVDMLSLHLGDGSGNVLKVTLWDDYAPMFNQKLIDQMHATPKPNVAIFTSTLVKQYQGELYVSSSRSTTIYINIDTPEVADLILSSKGKNSVLKTTETLSLTNVDVKTISELLSMAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCPHCRKTVSSTETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENTGRDSDLPKQLQHIIGSKHIFQVKLSSYFERRGVQSFTAHKILKPVVKIEKEDNIATACSSSSGSLTIEIPDLPKKRRKLILHSNKSGDKDQNEDVEDLED*	534

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g4037	533	PANTHER	BNAC01G35430D PROTEIN	72	494	-	-
	Mtr4g4037	533	MobiDBLite	consensus disorder prediction	513	533	-	-
	Mtr4g4037	533	Pfam	Domain of unknown function DUF223	99	165	IPR003871	-
	Mtr4g4037	533	Gene3D	-	172	311	IPR012340	-
	Mtr4g4037	533	SUPERFAMILY	Nucleic acid-binding proteins	61	166	IPR012340	-
	Mtr4g4037	533	SUPERFAMILY	Nucleic acid-binding proteins	178	298	IPR012340	-
	Mtr4g4037	533	Gene3D	-	312	489	IPR012340	-
	Mtr4g4037	533	CDD	RPA1_DBD_A_like	74	163	-	-
	Mtr4g4037	533	SUPERFAMILY	Nucleic acid-binding proteins	320	458	IPR012340	-
	Mtr4g4037	533	CDD	RPA1_DBD_C	322	485	IPR013955	-
	Mtr4g4037	533	Pfam	Replication factor-A C terminal domain	344	458	IPR013955	-
	Mtr4g4037	533	PANTHER	REPLICATION FACTOR A 1, RFA1	72	494	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Mtr4g4037	533	CDD	RPA1_DBD_B_like	197	303	-	-
	Mtr4g4037	533	Pfam	Replication protein A OB domain	188	289	IPR031657	-
	Mtr4g4037	533	Gene3D	-	60	165	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g4037	Mtr-Chr4	54177029	54180575	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g4037	101	458	Core DNA Replication Machinery Family	AT5G08020	26.146	7.69e-23	100

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g4037	-		-	mtr:MTR_4g070090	959.518