Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4034 ATGGAAGTTGTTTGGCAATTAGCAGTGGAACACATCATAGACGGATTTTACTTTATTAAGGTTCTGAAGTTTAAATTCTGTTATAAAAAGTCCGATTACTTGGGATTCGCGGTTATTATTACACACGAGGTTGCTCAGAAGCTTCTAAAGCATCATCGTCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCAGCTAGAAGAACTGAAGCTGAAAGCCTTGCTAAAGGGATAAATATAGTGGTAGCTACTCCTGGTCGTCTTCTGGATCATCTACAAAATACCAAGAGATTCATATATAATAACCTGAAGTGCCTCATTATCGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGATGAATTGAAGCAGATTATCAAGCTCCTCCCAAAGAACAGACAGACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAAGATCTTGCTCGCCTGTCATTTCAGACGACTCCTATCTATATTGATGTAGACGATGGGAGAAAGAAGGTTACAAATGAAGGGTTGCTTCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTTATGGTTCTTTATTCCTTCTTGAAGAGGCACAAATCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACAGTGTCAAATTCCATGCAGACATTTTTAATCACATTCATTTGCATTGTTCAAGTATTTACGGAAAACAAAAGCAGCAGACCCGGACAACTACTTTTGTTGACTTCTGCCAAGCAGAAAAGGGCATCTTGCTCTGTACTGACGTTGCTGCTCGTGGACTGGACATACCTTCTGTGGACTGGATTTTGCAGTACGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTCGGTAGAACAGCTCGTGGGGAAGATGGAAAAGGCAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGAAGCTAAGGTCCCTGTGAAAGAATACGCTTATGATGAAAAGAAGGTGGCAAACATACAGTCTCACCTGGAGAATTTGGTTGCTGAAAATTATTTTTTGAATAAAATGGCTAAAGAAGCTTATAAATCATACATATTAGCATACAATTCACATTCTTCAAAGGATATATTCAGTGTTCAACGCCTTGATATGCAGGCTGTTGCTGCTTCATTCTGTTTTTCGAACCCTCCAAATGTGAGTCTAAACATAAACATGAGCAAGCAAAGGAAGAAAACTCGCAGAGTTGATGGAAGTAGACATGGGTTCAATCCTAACAATCCTTATGGAAAGCGAAATGCTGATGATAAGCGGCAGTTTGTGAGGCATTAA 1323 0.3961 MEVVWQLAVEHIIDGFYFIKVLKFKFCYKKSDYLGFAVIITHEVAQKLLKHHRHSQTLGLVIGGSARRTEAESLAKGINIVVATPGRLLDHLQNTKRFIYNNLKCLIIDEADRILEANFEDELKQIIKLLPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLLQGYVVVPCAKRFMVLYSFLKRHKSKKVMVFFSSCNSVKFHADIFNHIHLHCSSIYGKQKQQTRTTTFVDFCQAEKGILLCTDVAARGLDIPSVDWILQYDPPDEPKEYIHRVGRTARGEDGKGNALLFLIPEELQFLRYLKEAKVPVKEYAYDEKKVANIQSHLENLVAENYFLNKMAKEAYKSYILAYNSHSSKDIFSVQRLDMQAVAASFCFSNPPNVSLNINMSKQRKKTRRVDGSRHGFNPNNPYGKRNADDKRQFVRH* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4034 440 SMART helicmild6 215 296 IPR001650 -
Mtr4g4034 440 MobiDBLite consensus disorder prediction 405 440 - -
Mtr4g4034 440 Pfam Helicase conserved C-terminal domain 191 295 IPR001650 -
Mtr4g4034 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 161 IPR014001 -
Mtr4g4034 440 PANTHER RNA HELICASE 39 438 - -
Mtr4g4034 440 Gene3D - 176 414 IPR027417 -
Mtr4g4034 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 318 IPR027417 -
Mtr4g4034 440 SMART DUF4217_3 336 399 IPR025313 -
Mtr4g4034 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 188 345 IPR001650 -
Mtr4g4034 440 SMART ultradead3 4 179 IPR014001 -
Mtr4g4034 440 CDD SF2_C_DEAD 176 306 - -
Mtr4g4034 440 Pfam DEAD/DEAH box helicase 43 150 IPR011545 GO:0003676|GO:0005524
Mtr4g4034 440 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 107 115 IPR000629 -
Mtr4g4034 440 PANTHER ATP-DEPENDENT RNA HELICASE DDX18 39 438 - -
Mtr4g4034 440 Gene3D - 37 172 IPR027417 -
Mtr4g4034 440 Pfam Domain of unknown function (DUF4217) 337 397 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4034 Mtr-Chr4 54153002 54159712 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4034 26 314 Eukaryotic Initiation Factors Gene Family AT3G13920 29.605 7.90e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4034 K13179 - gmx:100798885 704.901