Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4032 ATGGCAGACCCTGAAATCAATCTCCAAGCTTCTTCACCAATGAACGAAACCAATAACAATAACAAAAACAAAAACAAGAAGAAGAAGAAGCACGATAAGAAGCGAACCCGTGATATCGTTGAAGAAGAGGAACACGCCGAAGAGATTGTGAATGATACTCATAGCAACGAAGAGTCCTCAAAAAAGAAGAAGAAGAATAAAGAGGAAGAAGATGTTGTTGAAGTAGAAGATGAATTGGAAGAGAAAAAAGTGAAGAATAACAAAGGTTCTGGAATTATGAGTTCTGAATCATTTTCTTCTCTTGAATTATCTGAAAATACTTCTAAAGCTATTGTGGATATGGGATTTCAACACTTAACTCAGATTCAAGCAAGAGCGATTCCACCACTTTTGAGTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTAATTCCTGCTGTGGAGCTTTTGCACAAGCTTAAGTTTAATCAGCGAAGTGGAACCGGTGTTGTTATCATATGCCCTACTAGAGAGCTTGCCATTCAGACACACGAGGTTGCTCAGAAGCTTCTAAAGCATCATCGTCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCAGCTAGAAGAACTGAAGCTGAAAGCCTTGCTAAAGGGATAAATATAGTGGTAGCTACTCCTGGTCGTCTTCTGGATCATCTACAAAATACCAAGAGATTCATATATAATAACCTGAAGTGCCTCATTATCGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGATGAATTGAAGCAGATTATCAAGCTCCTCCCAAAGAACAGACAGACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAAGATCTTGCTCGCCTGTCATTTCAGACGACTCCTATCTATATTGATGTAGACGATGGGAGAAAGAAGGTTACAAATGAAGGGTTGCTTCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTTATGGTTCTTTATTCCTTCTTGAAGAGGCACAAATCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACAGTGTCAAATTCCATGCAGACATTTTTAATCACATTCATTTGCATTGTTCAAGTATTTACGGAAAACAAAAGCAGCAGACCCGGACAACTACTTTTGTTGACTTCTGCCAAGCAGAAAAGGGCATCTTGCTCTGTACTGACGTTGCTGCTCGTGGACTGGACATACCTTCTGTGGACTGGATTTTGCAGTACGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTCGGTAGAACAGCTCGTGGGGAAGATGGAAAAGGCAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGAAGCTAAGGTCCCTGTGAAAGAATACGCTTATGATGAAAAGAAGGTGGCAAACATACAGTCTCACCTGGAGAATTTGGTTGCTGAAAATTATTTTTTGAATAAAATGGCTAAAGAAGCTTATAAATCATACATATTAGCATACAATTCACATTCTTCAAAGGATATATTCAGTGTTCAACGCCTTGATATGCAGGCTGTTGCTGCTTCATTCTGTTTTTCGAACCCTCCAAATGTGAGTCTAAACATAAACATGAGCAAGCAAAGGAAGAAAACTCGCAGAGTTGATGGAAGTAGACATGGGTTCAATCCTAACAATCCTTATGGAAAGCGAAATGCTGATGATAAGCGGCAGTTTGTGAGGCATTAA 1752 0.3961 MADPEINLQASSPMNETNNNNKNKNKKKKKHDKKRTRDIVEEEEHAEEIVNDTHSNEESSKKKKKNKEEEDVVEVEDELEEKKVKNNKGSGIMSSESFSSLELSENTSKAIVDMGFQHLTQIQARAIPPLLSGKDVLGAARTGSGKTLAFLIPAVELLHKLKFNQRSGTGVVIICPTRELAIQTHEVAQKLLKHHRHSQTLGLVIGGSARRTEAESLAKGINIVVATPGRLLDHLQNTKRFIYNNLKCLIIDEADRILEANFEDELKQIIKLLPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLLQGYVVVPCAKRFMVLYSFLKRHKSKKVMVFFSSCNSVKFHADIFNHIHLHCSSIYGKQKQQTRTTTFVDFCQAEKGILLCTDVAARGLDIPSVDWILQYDPPDEPKEYIHRVGRTARGEDGKGNALLFLIPEELQFLRYLKEAKVPVKEYAYDEKKVANIQSHLENLVAENYFLNKMAKEAYKSYILAYNSHSSKDIFSVQRLDMQAVAASFCFSNPPNVSLNINMSKQRKKTRRVDGSRHGFNPNNPYGKRNADDKRQFVRH* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4032 583 Coils Coil 65 85 - -
Mtr4g4032 583 CDD DEADc_DDX18 107 306 IPR044773 GO:0003724|GO:0005524
Mtr4g4032 583 SMART DUF4217_3 479 542 IPR025313 -
Mtr4g4032 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 453 IPR027417 -
Mtr4g4032 583 CDD SF2_C_DEAD 319 449 - -
Mtr4g4032 583 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 56 577 - -
Mtr4g4032 583 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 96 124 IPR014014 GO:0003724
Mtr4g4032 583 Gene3D - 319 557 IPR027417 -
Mtr4g4032 583 Pfam Domain of unknown function (DUF4217) 480 540 IPR025313 -
Mtr4g4032 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 306 IPR027417 -
Mtr4g4032 583 SMART helicmild6 358 439 IPR001650 -
Mtr4g4032 583 MobiDBLite consensus disorder prediction 1 88 - -
Mtr4g4032 583 PANTHER RNA HELICASE 56 577 - -
Mtr4g4032 583 MobiDBLite consensus disorder prediction 548 583 - -
Mtr4g4032 583 MobiDBLite consensus disorder prediction 35 71 - -
Mtr4g4032 583 Gene3D - 43 308 IPR027417 -
Mtr4g4032 583 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 127 304 IPR014001 -
Mtr4g4032 583 Coils Coil 14 34 - -
Mtr4g4032 583 Pfam Helicase conserved C-terminal domain 334 438 IPR001650 -
Mtr4g4032 583 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 488 IPR001650 -
Mtr4g4032 583 Pfam DEAD/DEAH box helicase 120 293 IPR011545 GO:0003676|GO:0005524
Mtr4g4032 583 SMART ultradead3 115 322 IPR014001 -
Mtr4g4032 583 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 250 258 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4032 Mtr-Chr4 54138890 54146581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4032 96 437 Eukaryotic Initiation Factors Gene Family AT3G13920 31.412 1.11e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4032 K13179 - gmx:100798885 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4032 4 54138890 54146581 Mtr4g4032 4 54138890 54146581 ECH