Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4027 ATGACTGGTGGAAGAAGAAGGAGACATCACTTTAGTAAGATCCATGCATTTTCATGTGGTAAAGCATCAATGAAACAAGATGAACATTCACTTATAGGAGGACCTGGATTTTCAAGAAAAGTTTATTGCAATGATGCAGAACGTGCTATGTCTAGTCTTTATACATATGGTGATAATTATGTTAGAACTACTAAGTATACAGTTGCTACTTTTCTACCTAAGTCTTTGTTTGAACAATTCAGAAGGGTTGCCAACTTTTACTTCTTAGTTGTTGCAATTTTGTCTTTCTTCCCTATTGCTCCTTATTCTGCTGTTAGCAATGTTATTCCTCTTCTTGTTGTGGTTGCTGCTACTATGGCCAAAGAATTCATTGAAGATTTTCAAAGAAAAAAACAGGATATAGAGATGAATAACAGAAAAGTGAAAGTACATAGTGGAGATGGTGTTTTTAACCAATCTAAATGGAGGGATTTGAAAGTTGGAGACATAGTGAAAGTGGAAAAAGATGAGTATTTTCCTGCTGATCTCATATTACTTTCATCAAACTATGAAGAAGCAATTTGCTATGTCGATACGATGAATCTCGACGGAGAAACAAATCTTAAACTAAAACAAGCACTGGAAGGAACTTCAAATTTGCAAGAAGACTCGAGCTTTCAAAATTTCAAGGCTGTCATAAGATGCGAAGATCCAAACGCAAATTTGTATGCCTTTGTAGGAAGTTTAGAGCTTGGAGATGATCAACAATATCCACTTGCACCTCAGCAGCTACTTCTTAGAGACTCTAAGCTGAAGAACACAGATTTTATCTATGGTGTTGTGATCTTTACCGGTCACGATACAAAGGTTATGCAGAATTCAACGGATCCTCCATCCAAGAGAAGCAAGATTGAGAAAAGAATGGATAGGATTATATACTGTTTGTTCTTTTTATTAATTTTGGTTTCATTCATCGGTTCAATTTTCTTTGGTATTTGGACGAAGCAGGATATTAAAAATGGAAGAATGAAGAGATGGTACCTTATGCCTGAACATACTGAAGTTTACTATGATCCTGATGAAGCAGTACTTGCAGCCATTCTGCATTTCTTGACAGCATTGATGTTGTATGGTTACTTTATTCCGATTTCGTTGTATGTTTCCATTGAAGTTGTGAAGGTTCTTCAAAGCATTTTCATCAACCAAGATTTGAACATGTATCATGAGGAAACTGATAAGCCAGCGCATGCTCGTACATCGAATTTGAACGAAGAACTTGGTCAAGTTGATACCATACTTTCTGATAAAACAGGAACATTGACTTGCAATTCTATGGAATTTATCAAGTGTTCTATTGGTGGTGTTGCTTATGGAAGAGGTTTTACAGAAGTTGAGAGAGCTTTATCAAAGAGAAAAGATTCATATTTCGGCCGGAAAATGAAAAATGACCAAAATGTTGCAAAGGCTGCTGAGACAAAATCAAACATTAAAGGATTTAACTTTATGGATGAAAGGATCATGAATGGAAACTGGGTGAGACAACCTAATGCAAATGTAATACAGAACTTTCTGAAGGTTTTGGCTGTATGTCATACTGCAATACCTGAAGTTGATGAAGCAACTGGTAAAATTTCATACGAAGCTGAATCACCGGATGAGGCTGCTTTTGTGGTTGCAGCCAGAGAATTTGGATTTGAATTTTACGAAAGGTCACATGCAGCTATTTCACTTCATGAATTGGACCTTCAATCAAACATGAAATTAGAAAGGTCCTACAACCTTTTAAATGTATTAGAGTTTAGTAGTGCACGAAAGAGAATGTCCGTAATCGTAAGAGACCACAAGGGGAAACTACTGCTACTTAGCAAAGGTGCTGACAGTGTCATGTTTGAACTACTTGGAAAAAATGGAAGGGAGTTTGAAGAGCAGACTAAGTATCACATTAATGAATATGCTGATTCTGGTTTGAGGACTTTGATACTCGCCTATCGTGAACTCGATGAGCAAGAGTACAATCAGTTTAATAAAGAGTTGACAGATGCTAAAAACTTAGTGAGTGCAGATCAAGAGCAGATTGTAGAGGACATATTGCAAAACATTGAGAAGGATTTGATTCTTCTTGGTGCTACCGCAGTTGAAGATAAACTACAAGATGGGGTTCCTGAATGCATTGACAAACTAGCACAGGCTGGGATTAAGTTATGGGTATTGACCGGCGATAAAATGGAGACAGCAATTAATATTGGATTTGCTTGTAGTTTGCTTAGACAAGGAATGAAACAAATTATCATTAATTCAGATACTCCTGAAATCAAAACATTGGAGAAAATGGAGGACAAGTCTGCTTCTGAAGCGGCAATTAAGGCAAGTGTTGTTCAACAAATAACGGAGGCAAAGAAGTTACTTTCAAAATCAGATGACAACTCTGAGGCATTAGCTCTGATCATTGATGGGAAGTCTCTTGCTTATGCGCTAGAAGACGATGTAAAGAACGTGTTTCTTGAACTTGCGATTGGTTGCGCATCTGTTATATGTTGTCGTTCGTCTCCAAAACAAAAAGCACTTGTTACTAGACTGGTTAAGATGAGACCTGGTAGTACAACTCTAGCTATTGGAGATGGTGCAAATGATGTTGGTATGCTCCAAGAAGCTGATATTGGAATCGGTATCAGTGGTGTGGAAGGAATGCAGGCAGTTATGTCAAGTGATATCGCCATTGCTCAGTTTAGATATCTCGAACGCTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCATCAATGATCTGCTACTTCTTTTACAAGAATATCACCTTTGGCTTCACTTTGTTCTTCTATGAGATCTATACCGCATTCTCAGGCCAGGCTGCATACAATGACTGGTTCATGTCATTTTATAATGTATTCTTCACTTCACTTCCTGTTATTGCTTTGGGAGTTTTTGACCAAGATGTCTCCTCCAAATTATGTCTCAAGTTTCCACTACTATATCAAGAAGGTGTACAAAATTTACTCTTCAGCTGGAAAAGAATAATTGGTTGGGCATTGAACGGAGTAGCAAGTTCCACAATTATCTTCTTCTTCTGCATTCGTGCGATGGAGCATCAAGCATTTCGTGAAGGTGGCCAAGTTGTTGACTTTCAAGTTCTTGGTGCCACAGTGTACACATGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCAATCACTTACTTTACATACATACAACATTTATTCATATGGGGAAGCATTGTAATGTGGTACATTTTCCTCATGGCATATGGAGCCATAGATTCTTCTATATCAACAACTGCATATAAGGTCTTCACTGAAGCATGTGCACCATCACCATCTTATTGGATTCTTACTTTGCTTGTCCTTGTTGCTGCATTGCTTCCGTATTTCGCATATTCTACCATTCAAGTGCGGTTCTTCCCGGTGTATCATCAAATGGTACAATGGATAAGAAAGGATGGACAAGTAAATGATCCTGAATTTTGTGATATGGTAAGACAAAGATCGATTCGTCATACAACGGTTGGATTCACTGCTCGTTTAGAAGCTTCTAGACGTTTTGAAGCGTCTAGACGTTCAGAGATATCTTTAGTACCTGTGGATGGGAAGCCTGCAGAGAATCAATAA 3630 0.3793 MTGGRRRRHHFSKIHAFSCGKASMKQDEHSLIGGPGFSRKVYCNDAERAMSSLYTYGDNYVRTTKYTVATFLPKSLFEQFRRVANFYFLVVAILSFFPIAPYSAVSNVIPLLVVVAATMAKEFIEDFQRKKQDIEMNNRKVKVHSGDGVFNQSKWRDLKVGDIVKVEKDEYFPADLILLSSNYEEAICYVDTMNLDGETNLKLKQALEGTSNLQEDSSFQNFKAVIRCEDPNANLYAFVGSLELGDDQQYPLAPQQLLLRDSKLKNTDFIYGVVIFTGHDTKVMQNSTDPPSKRSKIEKRMDRIIYCLFFLLILVSFIGSIFFGIWTKQDIKNGRMKRWYLMPEHTEVYYDPDEAVLAAILHFLTALMLYGYFIPISLYVSIEVVKVLQSIFINQDLNMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIGGVAYGRGFTEVERALSKRKDSYFGRKMKNDQNVAKAAETKSNIKGFNFMDERIMNGNWVRQPNANVIQNFLKVLAVCHTAIPEVDEATGKISYEAESPDEAAFVVAAREFGFEFYERSHAAISLHELDLQSNMKLERSYNLLNVLEFSSARKRMSVIVRDHKGKLLLLSKGADSVMFELLGKNGREFEEQTKYHINEYADSGLRTLILAYRELDEQEYNQFNKELTDAKNLVSADQEQIVEDILQNIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIINSDTPEIKTLEKMEDKSASEAAIKASVVQQITEAKKLLSKSDDNSEALALIIDGKSLAYALEDDVKNVFLELAIGCASVICCRSSPKQKALVTRLVKMRPGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFFYEIYTAFSGQAAYNDWFMSFYNVFFTSLPVIALGVFDQDVSSKLCLKFPLLYQEGVQNLLFSWKRIIGWALNGVASSTIIFFFCIRAMEHQAFREGGQVVDFQVLGATVYTCVVWVVNCQMALSITYFTYIQHLFIWGSIVMWYIFLMAYGAIDSSISTTAYKVFTEACAPSPSYWILTLLVLVAALLPYFAYSTIQVRFFPVYHQMVQWIRKDGQVNDPEFCDMVRQRSIRHTTVGFTARLEASRRFEASRRSEISLVPVDGKPAENQ* 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4027 1209 Gene3D - 471 675 IPR023299 GO:0000166
Mtr4g4027 1209 SUPERFAMILY Calcium ATPase, transduction domain A 141 286 IPR008250 -
Mtr4g4027 1209 Coils Coil 657 677 - -
Mtr4g4027 1209 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1187 - -
Mtr4g4027 1209 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 830 947 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g4027 1209 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Mtr4g4027 1209 SFLD p-type atpase 408 915 IPR044492 -
Mtr4g4027 1209 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1187 - -
Mtr4g4027 1209 Gene3D - 115 288 - -
Mtr4g4027 1209 SUPERFAMILY HAD-like 421 919 IPR036412 -
Mtr4g4027 1209 Pfam E1-E2 ATPase 136 354 - -
Mtr4g4027 1209 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Mtr4g4027 1209 SFLD C1.7: P-type atpase like 408 915 - -
Mtr4g4027 1209 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1149 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Mtr4g4027 1209 CDD P-type_ATPase_APLT_Dnf-like 58 1024 - -
Mtr4g4027 1209 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 701 IPR023299 GO:0000166
Mtr4g4027 1209 Pfam Cation transport ATPase (P-type) 534 624 - -
Mtr4g4027 1209 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Mtr4g4027 1209 PRINTS P-type cation-transporting ATPase superfamily signature 750 760 - -
Mtr4g4027 1209 PRINTS P-type cation-transporting ATPase superfamily signature 864 883 - -
Mtr4g4027 1209 Pfam Phospholipid-translocating P-type ATPase C-terminal 892 1142 IPR032630 -
Mtr4g4027 1209 Gene3D - 696 904 IPR023214 -
Mtr4g4027 1209 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 1142 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4027 Mtr-Chr4 54078601 54084153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4027 10 1196 Primary Pumps ATPases AT3G25610 68.797 0.0 1743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4027 K01530 K14802 gmx:100799312 2008.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4027 4 54078601 54084153 Mtr4g4027 4 54078601 54084153 ECH