Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4024 ATGGAAAACAAAGACACCTTAAAATTTCCACACCAAACTCACAAAAACAACAATATTTCTTTGATCCCTCATGAAATAGACAAACCCTATGAGAACAAAGAAAGAAACACTATTAAGAAGATTCCAAAAACATCAAACAAAGGTCATCAGAAAAAGTATCTAGGAGTGAGGCAAAGGCCATCAGGAAGATGGATAGCTGAGATCAAAGACTCATCACAGAAACTAAGACTATGGTTAGGTACTTTTGATAGAGCAGAAGATGCTGCTCTGTCATATGATTCTGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAAACTAACTTTCCAAATACTCATGAACAAGATTTCAGCATTTTAGGGAAGAATCCTAGAGCTTTTCAGCTTCTTAAGCATGCAATGATGAAGAACCATGCAGTTTCTTCATCATCATCTGTTTATTCCACTGTCATGATGCCATGGAAAAATGACCAACTTGACGCGATTGTTGAAGAAACTATAGTTTGTTCTATTCCTGATGATGAAGGTTCTACAGCTGCAGGGTGTAGTGGAATTTCATTTGGAAATTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTCAGCGCTTCTTAA 615 0.3707 MENKDTLKFPHQTHKNNNISLIPHEIDKPYENKERNTIKKIPKTSNKGHQKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRAEDAALSYDSAARLLRGRNAKTNFPNTHEQDFSILGKNPRAFQLLKHAMMKNHAVSSSSSVYSTVMMPWKNDQLDAIVEETIVCSIPDDEGSTAAGCSGISFGNSKVYSSVVVAPSFSAS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4024 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 204 - -
Mtr4g4024 204 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Mtr4g4024 204 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Mtr4g4024 204 CDD AP2 51 111 IPR001471 GO:0003700|GO:0006355
Mtr4g4024 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 1 204 - -
Mtr4g4024 204 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Mtr4g4024 204 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Mtr4g4024 204 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Mtr4g4024 204 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
Mtr4g4024 204 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4024 Mtr-Chr4 54053155 54053962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4024 33 110 AP2-EREBP Transcription Factor Family AT5G19790 57.692 2.26e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g4024 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4024 - K09286 gmx:100807374 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4024 4 54053155 54053962 Mtr4g4024 4 54053155 54053962 ECH