Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4020 ATGGATATGGAGTTGCGGTTATTTACGGATATGCCTTTCATTGGTGGTTTTGTGTTCGAGTTGGCAAACTGTGGTGCTGCCACGTCAGTGATAACCGGTTATACTTTGTGGTCCCACTACTATATACAGTTGGGACTTGCACTTTCAGTTACTACATCTTTGTATTCCTGGATTCTGATGCCTGAGGTATCAGATATTGCTAAAATTGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCACTCACACATCACGAGCTATACAAACAAATCGGTATTGATCCTCCTCGAGGTGTTTTAGTATATGGCCCCCCTGGAACTGGTAAAACAATGCTTGTCAAAGCCGTTGCTAATCATACCAATGCCGCCTTCATCAGGGTTGTGGGTTCTTCTGAATTTGTGCAGAAGTATCTTGGTGAGGAAACAAACATTTTGTTACCTACTGTCTTCTTATTTTATGAAAAGTCAGCTATTACTACTTTCAATTCTTGTTCTTTTGAAAAGCCATCATCCCCTCGATCATTGCCATTTTTCATTTGA 561 0.4064 MDMELRLFTDMPFIGGFVFELANCGAATSVITGYTLWSHYYIQLGLALSVTTSLYSWILMPEVSDIAKIDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLVYGPPGTGKTMLVKAVANHTNAAFIRVVGSSEFVQKYLGEETNILLPTVFLFYEKSAITTFNSCSFEKPSSPRSLPFFI* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4020 186 CDD AAA 72 148 - -
Mtr4g4020 186 Pfam ATPase family associated with various cellular activities (AAA) 106 149 IPR003959 GO:0005524|GO:0016887
Mtr4g4020 186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 162 IPR027417 -
Mtr4g4020 186 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 6B HOMOLOG 56 152 IPR035256 GO:0036402
Mtr4g4020 186 Gene3D - 51 164 IPR027417 -
Mtr4g4020 186 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 56 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4020 Mtr-Chr4 54015956 54027866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4020 98 152 Calmodulin-binding Proteins AT3G56690 45.455 1.45e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4020 K03063 - mtr:MTR_4g112600 161.77