Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4014 ATGGGAAGCGACAGTGAAGGTGAGAAATCGGTGCAGAGGAAGAAGATGCAGGCTCTAGCCCCCATTGCTAAACCTCTTGCTGGGAAGAAGCTCTCCAAGAAAACACTCAAGCTTGTTAAAAGAGCTGCTGAAAACAAGTGCATAAAGAGAGGAGTTAAGGAGGTGGTTAAAAGTATAAGGCGAGGTCAAAAAGGAGTGTGTATTATAGCTGGGAACATATCGCCTATTGATGTCATCACTCATGTTCCGATTTTATGCGAGGATAAGGACATTCCATATGTATATGTCTCATCTAAAGAAGACCTTGCAACGGCAGGAGCAACGAAGAGGCCAACTTGTTGTGTTTTAGTGATGACCAAGCCTTCAAAGGGTGAACTATCTCAAGAGGTACAAGAGAAACTAAAGTCAGAGTATGATCAAGTTGCATCAGAGTGTAGAGAGCTTCAGTCTACACTTTTTTGA 462 0.4286 MGSDSEGEKSVQRKKMQALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVCIIAGNISPIDVITHVPILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELSQEVQEKLKSEYDQVASECRELQSTLF* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4014 153 PRINTS Ribosomal protein L7A/RS6 family signature 48 62 IPR018492 -
Mtr4g4014 153 PRINTS Ribosomal protein L7A/RS6 family signature 67 80 IPR018492 -
Mtr4g4014 153 PRINTS Ribosomal protein L7A/RS6 family signature 83 93 IPR018492 -
Mtr4g4014 153 PRINTS Ribosomal protein L7A/RS6 family signature 93 107 IPR018492 -
Mtr4g4014 153 PRINTS High mobility group-like nuclear protein signature 21 34 IPR002415 GO:0003723|GO:0005730
Mtr4g4014 153 PRINTS High mobility group-like nuclear protein signature 34 49 IPR002415 GO:0003723|GO:0005730
Mtr4g4014 153 PRINTS High mobility group-like nuclear protein signature 51 61 IPR002415 GO:0003723|GO:0005730
Mtr4g4014 153 PRINTS High mobility group-like nuclear protein signature 95 107 IPR002415 GO:0003723|GO:0005730
Mtr4g4014 153 SUPERFAMILY L30e-like 15 136 IPR029064 -
Mtr4g4014 153 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 151 - -
Mtr4g4014 153 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 35 119 IPR004038 -
Mtr4g4014 153 PANTHER - 2 151 - -
Mtr4g4014 153 Coils Coil 131 151 - -
Mtr4g4014 153 Gene3D - 13 141 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4014 Mtr-Chr4 53963152 53965341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4014 48 147 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 25.743 1.18e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4014 K11129 - twl:119981267 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4014 4 53963152 53965341 Mtr4g4014 4 53963152 53965341 ECH