Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4013 ATGGCACAAGACACTGTAATTGTATCTTCTGGTGCTGAATCACCACAACGTCGTCAAGGTTTACTACGAGATCAAGTTCAAATAGTTAAAAGAAAAGATGGTTCTGACCGCTATGAGATTGTTCCAATTCAAGATTCTTTATCATTTGAGAAAGGATTCTTCATTGTTATTCGTGCATGTCAGTTATTGGCTCAAAACAATGATGGAATTATTTTGGTAGGAGTTGCTGGTCCTTCTGGAGCTGGCAAAACTGTTTTTACTGATAAGGTTTTCAGTTTTATGCCAAGTATTGCTGTTATTACTATGGATAATTATAATGATTCTAGTCGAATCATTGATGGAAACTTTGATGACCCTCGATTGACGGATTATGATACCTTGCTAAAAAATATACAGGATCTTAAATCAGGGAAGCCTGCTCAGGTTCCGATATATGATTTCAAGTCCAGTTCTCGCATCGGATACAGGACTATTGAAGTCCCTAGCTCCCGTATCGTAATCATTGAAGGCATCTATGCCTTAAGTGAAAAATTACGACCATTGCTTGATCTTCGTGTTTCTGTCACCGGTGGAGTTCATTTTGACCTTGTCAAGCGTGTTTTGCGGGACATTCAACGAGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATACCCCATGTACAAAGCTTTTATAGAGCCAGATCTCCAAACAGCACATATAAAAATTATTAACAAGTTTAATCCATTCACTGGATTCCAGAATCCCACCTACATACTGAAGTCGGCAAAGGTTGTGACGGTGGATCAAATCAAGGTAGTTATTGCTGCAGAGCATACTGAAACCAAAGAGGAAACATATGACATATATCTTCTACCCCCTGGAGAAGACCCTGAAGCATGTCAATCATATTTGAGAATGAGAAACCGGGATGGAAAGTACAATCTTATGTTTGAGGAATGGGTTACGGATAGTCCATTCATTATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGTCTTCTTGGAGGGCTGATGGCCTTGGGGTATACAATTGCAGCAATCCTGAAAAGAAGCAGCCATGTCTTTCACGATGATAAAGTATCCATAAAAACTGACTGGCTCGAACAGCTTAATCGCCAATATGTCCAGGTGCAAGGGAAAGATAGAAACTATATTAAATTTGTAGCGGAGAAACTGGGTTTGGATGGTTCCTATGTCCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAATGATGTGATGACACTGCCAGAAGATCTGAAGACAAAACTCAGCATAGAGGATGATTCGGTTTCAAGCCCTAAAGAAGCACTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTACCTTAATCGTGGTGTTACACAGTCATATTCAAATCGAAGGGACAAAGTTCTACCTAATTTGACTAAACTTGCTATAAATAACAGAAGTTTTAATGGGAGAGCTCTAGAATCACCTGCTCCGATTGCCAACCAAGGAGTTATCATTCAACTTTCTGATCAAATTTCCACACTAAATGAAAGAATGGATGAGTTCACCTCTCGTATTGAAGAACTGAATTCAAAATTCGACTTTAAAAAAGTTTCATCCAGTCAACAAAACTTGGCTTTACAGGCTGACCCCTGCAATGGCTCTGGCCCCACTTCTCTTTTTGTTACTGGATTAAGCAATGGTTCATTGACTGGATCAATGCTTGCTAATTCTACATCATCCTCTCATCTGGTTAGAGAGTCTCCCCTAATGGAAGAGGTATTACTTGTTGCCCGAGGACAACGTCAAATCATGCATCAACTAGACACTCTGAGCAATCTTATGCAAGAATATTTCGGAGAAAGATCCCGTATGGGAAGGACAGACCAGGCAGGCGGAATGCGTGAAGTTGAATCCGTTGCCATCCCTCTGGTTCTGACTTTGGCCATTGGTGCTGTTGGCGTGTTCTTGTTCAAGGGTTTGACATCTAACAAATAA 1998 0.4034 MAQDTVIVSSGAESPQRRQGLLRDQVQIVKRKDGSDRYEIVPIQDSLSFEKGFFIVIRACQLLAQNNDGIILVGVAGPSGAGKTVFTDKVFSFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLKNIQDLKSGKPAQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSAKVVTVDQIKVVIAAEHTETKEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVSIKTDWLEQLNRQYVQVQGKDRNYIKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMTLPEDLKTKLSIEDDSVSSPKEALSRASADRRMKYLNRGVTQSYSNRRDKVLPNLTKLAINNRSFNGRALESPAPIANQGVIIQLSDQISTLNERMDEFTSRIEELNSKFDFKKVSSSQQNLALQADPCNGSGPTSLFVTGLSNGSLTGSMLANSTSSSHLVRESPLMEEVLLVARGQRQIMHQLDTLSNLMQEYFGERSRMGRTDQAGGMREVESVAIPLVLTLAIGAVGVFLFKGLTSNK* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4013 665 PANTHER URIDINE KINASE 9 653 - -
Mtr4g4013 665 Coils Coil 505 532 - -
Mtr4g4013 665 Gene3D - 71 251 IPR027417 -
Mtr4g4013 665 Gene3D - 259 413 - -
Mtr4g4013 665 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 9 653 - -
Mtr4g4013 665 Pfam Phosphoribulokinase / Uridine kinase family 73 241 IPR006083 GO:0005524|GO:0016301
Mtr4g4013 665 ProSiteProfiles CYTH domain profile. 253 415 IPR023577 -
Mtr4g4013 665 Pfam CYTH domain 277 409 IPR023577 -
Mtr4g4013 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 241 IPR027417 -
Mtr4g4013 665 SUPERFAMILY CYTH-like phosphatases 265 412 IPR033469 -
Mtr4g4013 665 CDD UMPK_like 72 244 - -
Mtr4g4013 665 PRINTS Uridine kinase signature 70 87 - -
Mtr4g4013 665 PRINTS Uridine kinase signature 137 152 - -
Mtr4g4013 665 PRINTS Uridine kinase signature 193 203 - -
Mtr4g4013 665 PRINTS Uridine kinase signature 229 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4013 Mtr-Chr4 53956250 53961602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4013 71 327 PRT Gene Family AT5G40870 25.940 1.79e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4013 K00876 - gmx:100803122 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4013 4 53956250 53961602 Mtr4g4013 4 53956250 53961602 ECH
Mtr4g2738 4 40936292 40953227 Mtr4g4013 4 53956250 53961602 PCT