Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4006 ATGGCCGATGTAACCTATCTCCGTCGTCACCACCACCACGAACCCGACGATGACCAAACCCTAATCCCTTTACCTTATTGGCCTTCCACTTCCGATCTCGACTTCGATTTCGATCTCTACTCTTCCGATCCCGAATTCCCATCCAATCACAACCACCGCTTTTCTCGCGAGAATTTCGTCATGGATCTTTTCCAACAACGCGTTGAACAATCTCAAATTACTAATCACACCGATCCAATTAATCAATCGTTAAATGACTCCGTTTTCGACAGTTTAAGTTTCGATTTAGGGTTCAATCATTCCGACCTTCATCTCGATCTTAACATCGCCGCTGAAGAAGACGAGGATGATTTTCCTGATATAACGGTTTCTAGATCTGATCCAATTAGCGGTTTACGTATTGTTGAGATTGATTCGGATTCTGAATGCGAAGAAGTTGATGGAAATGGAAACGGAGACAACGTGTTTTGCGGAATCTGTATGCATTCTGATGCTGACGAAGATGATTTTAACAATGTAATTGAGGAAGAAGAAATTGGGAGTTTTCCTCTTCGTTGGGATTCGCTTCATTTGGAGGATGATCCTCAAATTTACGAAGATTTTGAGTGGGAAGAAGTTGATGGTGGTGGCTTTGATGATAGGGAAATTCTTGGTTTGATGTTCGCTGCTGATGATGACGATAACAATAACAATAGGTCTGTTAATGGTAGTCGTGCTCGCGGTACTTCGTTTATTGAACAAGAAGAAGAACACGTGGATGAAGATGGAGAAGAGGTTACTATGTTGAGGGTTGATGGAGAAGAGGTTAATATGATGAGGGTTGGTGGAGGAACTGAGAATCTTGATTGGCAAGTTTTGTTGAATTCCGCGAGTCCTGAAACTTATCATGTGATTTCAGAGCCTGATTTTGGGGATAATGATGATTACATTTACACTGCAGAGTATGAGATGATGTTTGGTCAATTCGCGGATAATGTGAATTCGTTTACCAATAAGCCACCGGCTTCTGCAGCGTTTGTTGAGAATCTTCCGTCGGTGGTTGTGACTAAAGAGGATGTGGATAACAACAATGCGTTGTGTGCGGTTTGTAAAGATGAATTTGCTGTTGTAGAAGAGGTGAAGTTGTTGCCGTGTTCTCATCGATATCATGGTGATTGCATAATGCCTTGGTTGGGGATTAGGAATACTTGTCCTGTTTGTCGCTGTGAGTTTCCTACTGATGATGCTGATTATGAACGTAGGAAAGCTCCAATGTTGGCCCGGAGCGCTTGA 1272 0.4253 MADVTYLRRHHHHEPDDDQTLIPLPYWPSTSDLDFDFDLYSSDPEFPSNHNHRFSRENFVMDLFQQRVEQSQITNHTDPINQSLNDSVFDSLSFDLGFNHSDLHLDLNIAAEEDEDDFPDITVSRSDPISGLRIVEIDSDSECEEVDGNGNGDNVFCGICMHSDADEDDFNNVIEEEEIGSFPLRWDSLHLEDDPQIYEDFEWEEVDGGGFDDREILGLMFAADDDDNNNNRSVNGSRARGTSFIEQEEEHVDEDGEEVTMLRVDGEEVNMMRVGGGTENLDWQVLLNSASPETYHVISEPDFGDNDDYIYTAEYEMMFGQFADNVNSFTNKPPASAAFVENLPSVVVTKEDVDNNNALCAVCKDEFAVVEEVKLLPCSHRYHGDCIMPWLGIRNTCPVCRCEFPTDDADYERRKAPMLARSA* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4006 423 CDD RING-H2_RNF126_like 360 401 - -
Mtr4g4006 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 407 IPR013083 -
Mtr4g4006 423 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Mtr4g4006 423 Pfam Ring finger domain 360 401 IPR001841 -
Mtr4g4006 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 142 415 - -
Mtr4g4006 423 SMART ring_2 360 400 IPR001841 -
Mtr4g4006 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CIP8-LIKE ISOFORM X1 142 415 - -
Mtr4g4006 423 SUPERFAMILY RING/U-box 340 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4006 Mtr-Chr4 53881042 53882638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4006 8 407 C3H Transcription Factor Family AT5G60820 35.011 2.45e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4006 - - mtr:MTR_4g110100 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4006 4 53881042 53882638 Mtr4g4006 4 53881042 53882638 ECH