Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4005 ATGTCGACCTCGTTGCCTACATCAAACAAACGCCTCAAAGCCGAAGTGAAAATTGAAGAAGAAGACGACAATGACAATAACAATAACCAAGATGTTTGCTGCGGAATTTGCTACATCGAACGCGGAATTTCAGTCCCTGCACAAATTGATTGCTGCAGCCATTATTTTTGCTTCGTTTGCATCATGGAATGGGCCAAACATGAATCTCGATGCCCACTATGTCGCCAGAGATTCTCAAACGTTCGTAGACTCCCTATGCATGATGTCTTTTCTTCCTCTCGGGATGTTAAGATTCCTATTCGCGATCAGGTTTACCATCCTCATGGAAATATGACTAGTGGTCCTGTTGATTCTAATGCTGAACGCAAGTGTTGTATTTGCGATGGTGCGAAAGATGAAAACCTTATACTAATATGTGATCTTTGTGATACTGTTTCACATACGTTTTGTGTTGGATTGGGCTACACCGTTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTGTTTCCTTGGAGACTAATGCTAGTTATATGCTGGACCAACAAAATGTTGAGCTAAAAGCGGCGCCTGATGTAACCATCTTAAATATTTTGAGAGGAACAGGCAGCCAAGTGGTTAGAAGACCAATGGCATCTCCTGCACGACAAAACAATTCTTTGTCTTCTGATATTCCTTTACTTGATAGGGTGAGCAGATCCGAAGGTAAGAAACCTGTGTCGGAAGTCCAGCGTGCCCTGCGTAATGTTCAACTGCTTCGTGAAAATTGGAATTCTTTAAGAAGTGGTAAATTAAGGTTCCATAGCAAAACATTTCAATCTGGCGGTACAAGTAGTCAAACAGAAAATTCTAGTTCTTTATCATGTGGCAAATTAGATGATTCACATTCAATGGCTTCCGCAAGCCGTCAACAATCCATGGTCCAAGGTGCTCAATCCAGCAACATGTTGAGTAATGGTGGCTTGAAAGATGATGTTGACAAAGCTTGGAAAATGATGCGTAAGGCAAAGACGATGCAACAGACTCCTAAAAGAACAAGCAGAATTCAACAGGAAGTAGATGATGGTCCCTCATGCAGTGGTGCTAGAGAAAAATCATTTTCACCTCGTAGCTGCCCAGAATCGAAAAAACAACCCAGAACATTAGACTTTATGTACGCCAAAATGCAGGAGAAGTGTGACCACTCTTGTCTCAAAAAAAAATTGGAAAACCATCGGTCTCCGATGTTGGGAGAGAAAAGGCAAAGTAGGGTCTTGTGTGAGGAGAAGATACAACATTTGAGAAACCATAATACTCGTTTAGAAGGATACAGGGAACTTCCATTGCCCAGTAAGGTCCATACTAGTACACACAGAGCTCCCTGTCACAATGAAAGAAATGCCGCGAAGGAACAAAGGCAGTCTGCTTACTTGGTAACTTCAGTAGGTTTGGCACCCTCAAGTAGAAAATCTGGCAGCGTGTTCGCCTCTAATAAAGATGTGGATATTTTCAATAAAGAAAAGAGCTTGGCTAAAAGCTTCGGGAATGGAATCACAAAAAATACCGAAGATGCAAAAACAGAGATCCAGTCTCTTGTTAAACTAAATTTGAATTGCCTAGCTATCAACAAACAATTAGGTGTCGAAACCTTCAAGGTAGTTGCAAGGCAAGCCACCCATACCATCTTGGCTGCTTGCCATTCCGAGCAGCAAAAGTCTAATATATACTCCTCGAACTCAGTATGCAGCCATACTGACCATATTCAGTTTCAGAAGTCTAATTTAATGCCCAATTGTTGCCGGCAATGCTTTCATGTCTTCGTGAACGATGTTGTCAAGTCAATGTTGGAAAAAGTGGGCTGTTCTTGA 1845 0.4179 MSTSLPTSNKRLKAEVKIEEEDDNDNNNNQDVCCGICYIERGISVPAQIDCCSHYFCFVCIMEWAKHESRCPLCRQRFSNVRRLPMHDVFSSSRDVKIPIRDQVYHPHGNMTSGPVDSNAERKCCICDGAKDENLILICDLCDTVSHTFCVGLGYTVPEGDWFCHDCAVSLETNASYMLDQQNVELKAAPDVTILNILRGTGSQVVRRPMASPARQNNSLSSDIPLLDRVSRSEGKKPVSEVQRALRNVQLLRENWNSLRSGKLRFHSKTFQSGGTSSQTENSSSLSCGKLDDSHSMASASRQQSMVQGAQSSNMLSNGGLKDDVDKAWKMMRKAKTMQQTPKRTSRIQQEVDDGPSCSGAREKSFSPRSCPESKKQPRTLDFMYAKMQEKCDHSCLKKKLENHRSPMLGEKRQSRVLCEEKIQHLRNHNTRLEGYRELPLPSKVHTSTHRAPCHNERNAAKEQRQSAYLVTSVGLAPSSRKSGSVFASNKDVDIFNKEKSLAKSFGNGITKNTEDAKTEIQSLVKLNLNCLAINKQLGVETFKVVARQATHTILAACHSEQQKSNIYSSNSVCSHTDHIQFQKSNLMPNCCRQCFHVFVNDVVKSMLEKVGCS* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4005 614 PANTHER F18C1.6 PROTEIN 13 610 - -
Mtr4g4005 614 MobiDBLite consensus disorder prediction 269 322 - -
Mtr4g4005 614 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 13 610 - -
Mtr4g4005 614 SUPERFAMILY FYVE/PHD zinc finger 116 169 IPR011011 -
Mtr4g4005 614 Pfam PHD-finger 124 168 IPR019787 -
Mtr4g4005 614 MobiDBLite consensus disorder prediction 335 377 - -
Mtr4g4005 614 MobiDBLite consensus disorder prediction 269 319 - -
Mtr4g4005 614 MobiDBLite consensus disorder prediction 210 226 - -
Mtr4g4005 614 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Mtr4g4005 614 SMART PHD_3 123 168 IPR001965 -
Mtr4g4005 614 SUPERFAMILY RING/U-box 33 81 - -
Mtr4g4005 614 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Mtr4g4005 614 MobiDBLite consensus disorder prediction 206 241 - -
Mtr4g4005 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 178 IPR013083 -
Mtr4g4005 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 98 IPR013083 -
Mtr4g4005 614 ProSiteProfiles Zinc finger PHD-type profile. 121 170 IPR019787 -
Mtr4g4005 614 SMART ring_2 34 74 IPR001841 -
Mtr4g4005 614 Pfam Ring finger domain 34 75 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4005 Mtr-Chr4 53872275 53875640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4005 17 105 C3H Transcription Factor Family AT5G19430 30.769 1.04e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr4g4005 PHD 8.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4005 - - gmx:100808541 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4005 4 53872275 53875640 Mtr4g4005 4 53872275 53875640 ECH