Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4004 ATGGAGCTTCCTCAAACACGTTCTTATGGAGCTGGAGGAGCAGGGAGGAAATCGACGCATGATTTTCTGTCGCTATACAGTAATTCAACTGCCGAACAAGATCCAAGGCCATCTGCTCAAGCAAGTTTCCTCAAGACCCATGATTTCTTGCGGCCACTAGAGGAGGTAGAAGCAAAATCCAGTGCCAAGGAAGAAGCCACAGATGAAATCTCATCGGTGGTTGAGAAGCAACCCCCTTTAGCAACACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGTATCAGCCACATTAATTCCTGCGTGAATAATAATCAAAGGGTTCCAAAGCCAGAAGCATCATCACTTTTCACTGTGCATCAAGCAACTAGTGCTGATAGAAATGACGACAACTCCAATTGCAGTTCACATACTTCAAGCGGTTTCACATTGTGGGAAGAGTCTGAGATTAGAAAGGGAAAGACAGGAAAGGAGAATAATGTTGGGGATAAACCCATTATAGGAGATTCTGCTGCTAAGTTAGGACAGTGGACATTGAAGGAGCGAACGTCTCAATCGTTTTCTAACAATCATCATGGCAGCTTCAACTCTCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCGCAGGATTGTGCCCAGGATGAGGAGCTCGAAAATGAAGGAACGTTTTTTCTCAAGAGAGAATCCTCGAATGTTCAAAGAGGAGAACTAAGGGTGAGAGTGGACGGCAAGAGTACTGATCAAAAGCCGAATACACCGAGATCAAAACATTCTGCAACAGAGCAGCGAAGAAGAAGCAAAATTAATGACAGGTTTCAGATGCTACGAGAGCTTATTCCTCACAGTGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTGCAAGAGAAGGTTCATAAGTATGAAGGTTCATTCCAAGGTTGGAATAACGAACCAGAAAAACTGATGCCATGGAGAAATAATGACAGGCCAGCAGAAAGTTTTCAACCTCGCAGCGCAAATGGTGGGTCTAATCCATCTCCAACATTGTTGTTTGCTTCAAAGGTTGACGAGAAAAACATCACCATCTCCCCAACAACTCATGGGGGTATCCATAATGTAGAATCTAGCTTGAGCACAACAACTGCCTTGAAGACAATAGATCATCCATCTGGAATAACAAACAAGGCTTTTCCAAGTCCTATTTCTTCCCAACCAAATTTCTTAACTTCAACCCAAATCGGAGGTTCAGGTGGAGCAGTGTCTCAGCTCAGACGTAGATTATCATCTGATGCAGAGAACACCAATTATCAACCTTCAGTAGAATCTCAGACTATGACTTCAACCAGTGAAAAGCTGAAAGAGAAAGAGCTCACCATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCACAAGGGTTGTTGGATACACTTACACAAGCCTTGCAGAGTTCGGGAGTGGATTTATCACAGGCTAGCATTTCGGTGCAAATTGAACTTGGTAAACAAGCAAGCCTCAGACCAAACATACCAATGCCAATGTGTGTTTCCAAGGATGATGAAGATCCTTCTAAGAATCAAAGGAAAATGCGCTCTGGCTCTAGAGTCGCTAGCTCTGAGAAGTCTGATCAAGCACTAAAGAAGCTGAAAATGTGCAGAAGTTAA 1713 0.432 MELPQTRSYGAGGAGRKSTHDFLSLYSNSTAEQDPRPSAQASFLKTHDFLRPLEEVEAKSSAKEEATDEISSVVEKQPPLATPASVEHLLPGGIGTYSISHINSCVNNNQRVPKPEASSLFTVHQATSADRNDDNSNCSSHTSSGFTLWEESEIRKGKTGKENNVGDKPIIGDSAAKLGQWTLKERTSQSFSNNHHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRESSNVQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLMPWRNNDRPAESFQPRSANGGSNPSPTLLFASKVDEKNITISPTTHGGIHNVESSLSTTTALKTIDHPSGITNKAFPSPISSQPNFLTSTQIGGSGGAVSQLRRRLSSDAENTNYQPSVESQTMTSTSEKLKEKELTIEGGAISISSVYSQGLLDTLTQALQSSGVDLSQASISVQIELGKQASLRPNIPMPMCVSKDDEDPSKNQRKMRSGSRVASSEKSDQALKKLKMCRS* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4004 570 MobiDBLite consensus disorder prediction 428 465 - -
Mtr4g4004 570 Pfam Helix-loop-helix DNA-binding domain 268 317 IPR011598 GO:0046983
Mtr4g4004 570 MobiDBLite consensus disorder prediction 128 171 - -
Mtr4g4004 570 MobiDBLite consensus disorder prediction 249 282 - -
Mtr4g4004 570 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 567 IPR044295 GO:0003700|GO:0006351|GO:0046983
Mtr4g4004 570 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 337 IPR036638 GO:0046983
Mtr4g4004 570 MobiDBLite consensus disorder prediction 128 149 - -
Mtr4g4004 570 MobiDBLite consensus disorder prediction 341 361 - -
Mtr4g4004 570 MobiDBLite consensus disorder prediction 347 361 - -
Mtr4g4004 570 PANTHER TRANSCRIPTION FACTOR BIM1 1 567 - -
Mtr4g4004 570 MobiDBLite consensus disorder prediction 428 463 - -
Mtr4g4004 570 CDD bHLH_AtBIM_like 265 341 - -
Mtr4g4004 570 MobiDBLite consensus disorder prediction 21 39 - -
Mtr4g4004 570 SMART finulus 272 322 IPR011598 GO:0046983
Mtr4g4004 570 MobiDBLite consensus disorder prediction 187 213 - -
Mtr4g4004 570 MobiDBLite consensus disorder prediction 56 71 - -
Mtr4g4004 570 MobiDBLite consensus disorder prediction 56 79 - -
Mtr4g4004 570 MobiDBLite consensus disorder prediction 524 570 - -
Mtr4g4004 570 MobiDBLite consensus disorder prediction 1 39 - -
Mtr4g4004 570 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 316 IPR011598 GO:0046983
Mtr4g4004 570 Gene3D - 263 337 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4004 Mtr-Chr4 53840501 53849063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4004 1 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.513 6.76e-127 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g4004 HLH 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4004 - - gmx:100808016 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4004 4 53840501 53849063 Mtr4g4004 4 53840501 53849063 ECH