Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3995 ATGGGGAGGGGAAGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATAGACAAGTCACTTTTTCAAAGAGAAGGTCTGGTTTGTTGAAGAAAGCACAAGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATTATTTTCTCTACTAAAGGCAAGCTTTTTGAATACTCCAGCGATCCTTGTATGGAAAAAATTCTTGAACGATATGAAAGATGTTCGTATATGGAGAGGCAACTTGTTACAAGTGAGCAGTCACCAAATGAAAATTGGGTTCTAGAGCACGCAAAACTCAAGGCTAGGATGGAAGTGCTTCAGAGAAATCAAAGGAATTTTATGGGAGAAGACTTGGATGGTTTAGGTCTCAAAGAGCTTCAAAGTTTGGAACAACAACTTGATTCAGCTCTCAAACAAATTAGATCACGGAAGAACCAAGTTATGTATGAATCTATTTCAGAACTTCAGAAAAAGGATAAGGCCCTCCAAGAACATAACAACATGCTCACCAAGAAGATAAAGGAAAAAGAGAAGGAACTGCAAAATAGTGTGGAGGTGACTCCAATTGAAACACAACCATTGGAATCCATGAATACTACAGGATCAGGGTCCCTACAAGCGAATTGCAATGAAGAAACAGCAGCACAAACAAGAGGTGGTGCCATTCTTCCGTCTTGGATGATTCGTCCTATAAATGAATAG 699 0.3963 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAQEISVLCDAEVALIIFSTKGKLFEYSSDPCMEKILERYERCSYMERQLVTSEQSPNENWVLEHAKLKARMEVLQRNQRNFMGEDLDGLGLKELQSLEQQLDSALKQIRSRKNQVMYESISELQKKDKALQEHNNMLTKKIKEKEKELQNSVEVTPIETQPLESMNTTGSGSLQANCNEETAAQTRGGAILPSWMIRPINE* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3995 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr4g3995 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g3995 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr4g3995 232 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 198 - -
Mtr4g3995 232 Coils Coil 88 108 - -
Mtr4g3995 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr4g3995 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g3995 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g3995 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr4g3995 232 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mtr4g3995 232 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Mtr4g3995 232 Coils Coil 151 185 - -
Mtr4g3995 232 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mtr4g3995 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 - -
Mtr4g3995 232 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g3995 232 Coils Coil 122 145 - -
Mtr4g3995 232 Pfam K-box region 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3995 Mtr-Chr4 53729854 53735560 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3995 1 194 MADS-box Gene Family AT1G26310 62.621 1.16e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr4g3995 K-box 2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3995 K09264 K09260 gmx:100816836 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0468 6 5591524 5596953 Mtr4g3995 4 53729854 53735560 ECH
Mtr4g3995 4 53729854 53735560 Mtr4g3995 4 53729854 53735560 ECH
Mtr4g3995 4 53729854 53735560 Mtr2g2081 2 31092716 31112083 PCT