Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3994 ATGGGAAGAGGGAGAGTTGAACTAAAGAGAATAGAGAACAAAGTTAATAGACAAGTCACATTTGCTAAGAGAAGAAATGGTGTACTCAAGAAGGCTTATGAACTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAACCGTGGCAAACTATATGAATTCAGCAGCACCTCCTGCATGATGAAAACATTGGAGAAATACCACAAGTACAGTTATAATGAACTGGAGACCAACCAACCAGCCAATGATACTCCGAATTACCAAGAATATGTGAGATTAAAAGCACATGTAGAAATTTTACAACGTTCACAAAGGAACCTTCTTGGGGAAGATATTGCACAAATGAATACAGGTGAGCTAGAGCAAATTGAAAATCATTTGGAGGCAGCACTTAAGAGTATAAGATCAACAAAGACTCAATTCATGCTTGATCAACTCAATGATCTTCACTATCGGGAAACGGTGCTTGTTGAAACAAATAACGATCTGAGAAGTAAGTTAGAAGAAACCGATAACTTACAAGTTCCAGGTAGAATATTGGCTTTGGAAGCTGGTGGATCTAATTTCCATCATGCACCCTTTCCTTCACAATCAGATAGGTTTTTCCACCATGTGGGAGTAAATTCCAACTTGCAAATTGGATACAATCCGATGGGTTCTGCTGATGGAGCATCATCCTTAAGAATGAATGGATTCGACGCTATGACGTGGATGCTCTGA 729 0.3909 MGRGRVELKRIENKVNRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYSYNELETNQPANDTPNYQEYVRLKAHVEILQRSQRNLLGEDIAQMNTGELEQIENHLEAALKSIRSTKTQFMLDQLNDLHYRETVLVETNNDLRSKLEETDNLQVPGRILALEAGGSNFHHAPFPSQSDRFFHHVGVNSNLQIGYNPMGSADGASSLRMNGFDAMTWML* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3994 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr4g3994 242 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 226 - -
Mtr4g3994 242 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g3994 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Mtr4g3994 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mtr4g3994 242 Coils Coil 123 143 - -
Mtr4g3994 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr4g3994 242 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g3994 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr4g3994 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g3994 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g3994 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr4g3994 242 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Mtr4g3994 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g3994 242 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3994 Mtr-Chr4 53711048 53717851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3994 1 217 MADS-box Gene Family AT5G15800 57.466 2.47e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr4g3994 K-box 4.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3994 K09264 K09260 gmx:100797819 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3994 4 53711048 53717851 Mtr4g3994 4 53711048 53717851 ECH