Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3993 ATGGAATCTTGGAGTTATATTTCTGAAGAAAAAGGTTCTGAAGAATTAGGTTTTTGTGAAATGTTTGGGAAACAATATTCAGATGATTTCAATTTCATTGGAAATGTTCCAAGCAAGAAACTTGATGGTAAATTTGATGACCCAAATGAGTTTTCTGTAAAAGGGGACACAAATTTCAAGCTTTCAAATTCTGTGGTGGAATCTAATGGTTGGGATTCTCTGATTGATTTGAAGCTAGGAAGATTTGATGATCATGGTAATGCTTCAATTGATGTGGCATTTTCCAAAGGAGCAGCACCTATTTTGTCTTCTTGTGAATCTTCAACTCCTCCCAAGAGAGTGAGAGTGCACTCAATGACTGCATATTGTCAAGTTTATGGATGTAACAAAGATCTTAGTTCTTGTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCTAAGACTCCTATAGTCATTGTGAATGGAATTGAGCAAAGGTTTTGTCAACAATGTAGCAGGTTTCATTTGCTGTCTGAATTTGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTCGAAGAAAACCACAAGGCATTCACTCTGCAAATTCTGGGAGACTGTTTCAGCCATTTGGTGATATCGGATTCCAGGGAACCAAGCCACCAGCAGCATCTTTTCTCTGCCCAGAGGTCTTCCAAAGTGGTTTCTGGAGACCTATGAAAGCAGAACATGAAGCTGGCTTTAGGCATCTTTCTTCTGTGCCTGTTACCAATGGACATCTTCAATCAAGATCTCCGTTTCCTTCTTACAACGAAAAACAATTTCCATTTCTTCATGAAAATGTTGCCACATCCACTACAGGCAGTAAGTTCAGTGAAAACAATAGCCATTACGCGCATGCCATTGGCTACGCCTCATTAGGAAATGAAGACTTCAATGTTTTTCATACCGCACCAAGCATTCAAGGATTATCAGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAATCCAATAACACTTCAAGCCAGTCCTCGGAAATTCCCTTTGATAACCCTTTGGTTATTCCAAGCAGCCATAGCCATGTCTACAGCATAAGATCACAGGCAACTTCCTCAAGCCGAGTGTCTGATAGATTTTTATCCAAATTAAATCCTGCAGATGGAAGTCATCTCAGTCCTATATTGGTATCAGACAATAATGATATTGTGAACTTTGAAATGGAAGATGGGATCTTCCATGATTCAGATTTTGTGAATGCTAGAGACTGTCTTTCGTGTGAAGATGATGCAACCATCGACTTACTACAACTGTCGTCGCAGCTTCAGCGAGTTGAGCATCATAGACAATCATTGCAGGTGAAGAAAGAGTTTGATTCTTCTTGCACTCTTCGAATTACTTAA 1413 0.3999 MESWSYISEEKGSEELGFCEMFGKQYSDDFNFIGNVPSKKLDGKFDDPNEFSVKGDTNFKLSNSVVESNGWDSLIDLKLGRFDDHGNASIDVAFSKGAAPILSSCESSTPPKRVRVHSMTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTPIVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQGIHSANSGRLFQPFGDIGFQGTKPPAASFLCPEVFQSGFWRPMKAEHEAGFRHLSSVPVTNGHLQSRSPFPSYNEKQFPFLHENVATSTTGSKFSENNSHYAHAIGYASLGNEDFNVFHTAPSIQGLSGISDSCALSLLSSQSNNTSSQSSEIPFDNPLVIPSSHSHVYSIRSQATSSSRVSDRFLSKLNPADGSHLSPILVSDNNDIVNFEMEDGIFHDSDFVNARDCLSCEDDATIDLLQLSSQLQRVEHHRQSLQVKKEFDSSCTLRIT* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3993 470 Gene3D - 119 184 IPR036893 GO:0003677|GO:0005634
Mtr4g3993 470 SUPERFAMILY SBT domain 121 198 IPR036893 GO:0003677|GO:0005634
Mtr4g3993 470 Pfam SBP domain 123 196 IPR004333 GO:0003677
Mtr4g3993 470 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 470 IPR044817 GO:0003677
Mtr4g3993 470 PANTHER 1 PROTEIN, PUTATIVE-RELATED 9 470 - -
Mtr4g3993 470 ProSiteProfiles Zinc finger SBP-type profile. 120 197 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3993 Mtr-Chr4 53686104 53690479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3993 75 197 SBP-box Gene Family AT1G69170 64.286 1.85e-45 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr4g3993 SBP 8.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3993 - - gmx:100817547 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3993 4 53686104 53690479 Mtr4g3993 4 53686104 53690479 ECH