Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3992 ATGAACGGGCAAAGAGGCGAAAGAGCACCTCTTTTGGAGGCTGAGCGCGGTGGTGGAAGGGGTAAGAAACGCGACGATTCCACTGCAGATCAAGTATCAGACCTTGAACATGGTGATGGAGTACCGGCTGCACATGTGGGATTCTTTAGAGTCTTTTCACTTGCAAAGCCTGAGGCTGGAAAATTGGTCATTGCTACGGTGGCTCTGTTGATTGCAGCCACATCAAGTACCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCGGGGGATATCAAAACTCCTGAGGAGAAAGACGCAGCATTAGAGGCTGTCAAGAATACCATACTTGAAATCTTTCTCATTGTTGTTATCGGTTCTGTTTGCTCGGCACTTCGAGCCTGGCTTTTTTATTCTGCCAGTGAAAGGGTTGTTGCACGGCTAAGGAAGAATTTGTTCAGTCACCTTGTAAACCAGGAAATAGCTTTCTTTGATGTTACTCGGACTGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATTAAGAATGCTGCAACTACCAACCTCTCAGAGGCCTTGAGAAACTTGTCAACTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGTTAACATTATTGGCTTTGGCTGTTGTACCTGTTATTTCTGTCGCTGTTCGTCAATTTGGTCGTTTCCTGCGTGAACTCTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCTTCTTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACGGTTAGATCTTTTGCTCAGGAAGATTATGAAATAGAACGCTACTCTGAGAAAGTTAACGAGACTCGATCACTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTCTCTGGAGGTCTTAATGCAGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACGATCAAGGGTTCCATGACCTCGGGTGATCTTACATCATTCATTCTTTATAGTCTCTCAGTTGGATCTTCTATATCTGGTTTGTCAGGATTGTATACTGTAGTTATGAAAGCTGCCGGCGCTAGCAGAAGGGTATTTCAACTGTTGGATCGTGCCTCATCGATGCCTAAGGCAGGAGATAAATGTCCTCTGGGTGATCATGATGGGGAAGTGGAACTAAATGATGTATGGTTTTCCTATCCATCACGCCCTAATCATATGGTGCTCAAGGGCATTAATATAAAACTGCAACCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGCGGTGGCGGAAAGACTACAATCGCAAACTTAATTGAAAGATTTTATGACCCAACTAAGGGAAATATTCTCGTGAATGGTGTTCCTCTGGTAGAGATATCACACAAACATTTACACAGAAAGATCAGCATAGTTAGTCAGGAGCCTACACTCTTCAATTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAATTGAGGACGCTGATATTGAAAATGCAGCTAAAATGGCCAACGCGCACGAATTTATATCAAATTTCCCAGAAAAATACAAGACCTTTGTTGGAGAACGAGGCATAAGGCTTTCCGGAGGACAGAAACAAAGAATAGCAATTGCTAGAGCATTGCTTATGGACCCGAAAATTCTCTTACTTGATGAAGCCACCAGTGCCTTAGATGCTGAAAGCGAATACTTAGTGCAGGATGCTATGGATTCAATCATGAAGGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAATACTGTTGCAGTTGTTTCTGATGGTCAAATTGTTGAGAGTGGCACTCATGACGAGCTTCTCGAGAAGAATGGTGTTTATACTGCATTAGTCAAGAGACAACTACAGACAACAAAAACCGAAATCTAA 1902 0.4217 MNGQRGERAPLLEAERGGGRGKKRDDSTADQVSDLEHGDGVPAAHVGFFRVFSLAKPEAGKLVIATVALLIAATSSTLVQKFGGKIIDIVSGDIKTPEEKDAALEAVKNTILEIFLIVVIGSVCSALRAWLFYSASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMFATSWKLTLLALAVVPVISVAVRQFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEIERYSEKVNETRSLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGSMTSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRASSMPKAGDKCPLGDHDGEVELNDVWFSYPSRPNHMVLKGINIKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGNILVNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKIEDADIENAAKMANAHEFISNFPEKYKTFVGERGIRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVESGTHDELLEKNGVYTALVKRQLQTTKTEI* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3992 633 MobiDBLite consensus disorder prediction 9 33 - -
Mtr4g3992 633 Gene3D - 381 630 IPR027417 -
Mtr4g3992 633 Pfam ABC transporter transmembrane region 62 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr4g3992 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 625 IPR027417 -
Mtr4g3992 633 PIRSF ABC_prm/ATPase_B 18 633 - -
Mtr4g3992 633 MobiDBLite consensus disorder prediction 1 38 - -
Mtr4g3992 633 SUPERFAMILY ABC transporter transmembrane region 50 367 IPR036640 GO:0005524|GO:0016021
Mtr4g3992 633 Gene3D ABC transporter type 1, transmembrane domain 41 367 IPR036640 GO:0005524|GO:0016021
Mtr4g3992 633 Pfam ABC transporter 405 555 IPR003439 GO:0005524
Mtr4g3992 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 387 624 IPR003439 GO:0005524
Mtr4g3992 633 CDD ABC_MTABC3_MDL1_MDL2 387 625 - -
Mtr4g3992 633 CDD ABC_6TM_AtABCB27_like 65 361 - -
Mtr4g3992 633 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524
Mtr4g3992 633 SMART AAA_5 414 608 IPR003593 -
Mtr4g3992 633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 353 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr4g3992 633 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 2 629 - -
Mtr4g3992 633 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 629 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3992 Mtr-Chr4 53662028 53666881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3992 48 633 Calmodulin-binding Proteins AT2G36910 33.893 5.36e-94 313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3992 4 53662028 53666881 Mtr4g3992 4 53662028 53666881 ECH