Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3989 ATGTGCATGCAGGAGAAAACAATTAGGTTGATGATGATAGAAAGTTCAAGAAAAGATTATAACAAAGAAGCAACAAAACAAGAAGGTGAACATGGAAGAATGGAATCAGAGAAATTCTCCAACAAAGCAATAGCTACATCAAGACAATGGACATCATTAAGAAATCCAAGAATAGTGAGAGTGTCACGTTCTTTAGGAGGAAAAGACAGACACAGCAAAGTTTGCACAATTAGAGGATTAAGAGACCGTAGGATTAGGTTGTCTGTACCAACAGCAATTCAGCTATATGATCTTCAAGATAGACTTGGTTTAAGTCAACCTAGTAAAGTTGTTGAATGGTTAATTGAAGCAACTCAATCTGATATTGATAAATTACCACCACTTGATATTCCTCAAAGTTTCACTCAACAACAAACCCTATTTCAGCAACCAGCAGGTAGTACTTGTTTTTCTCTTGGAGGTGGTTTTTATGGTATGAATCAAACCAAAGGTAAAGAAGCTGAAAGTTCAGAAAAGGGTAATTATTATAATACTAATAATTCATCAAATGGTTTTCCTTTTCCATATAACTTGGATCCTTCAAGCACTCTATCTTTATCACAATTTGGAAGCCATCATGGTAATTTATTTCCTTCTTATCAAATAAGTACTAGTGGCAGTGGTATGCAATTTTCATCATCATCTTCAAATTTGACAGTACCTAATTCATCTGGTAATTCACAGTTACTTTTTTGTCCTTCTGTTATGCCATTGCCATCACTTTTTACTAGTACTCTTAATGCTCCATCAATGGAAAGTAGTGATATTCAAAGACAATCCAACCATGTTCAGATCTTGAACTCCTCAAGTAATGGTTCTTTCATTCCAACTATTCATCTTCCAATAAATTCGCCTTTTAGACGCCATCCAACACTGTTTAGTTCCAAGCTTCTTGATTCAGATCATAATATATAA 954 0.3449 MCMQEKTIRLMMIESSRKDYNKEATKQEGEHGRMESEKFSNKAIATSRQWTSLRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVEWLIEATQSDIDKLPPLDIPQSFTQQQTLFQQPAGSTCFSLGGGFYGMNQTKGKEAESSEKGNYYNTNNSSNGFPFPYNLDPSSTLSLSQFGSHHGNLFPSYQISTSGSGMQFSSSSSNLTVPNSSGNSQLLFCPSVMPLPSLFTSTLNAPSMESSDIQRQSNHVQILNSSSNGSFIPTIHLPINSPFRRHPTLFSSKLLDSDHNI* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3989 317 MobiDBLite consensus disorder prediction 20 38 - -
Mtr4g3989 317 Pfam TCP family transcription factor 67 165 IPR017887 -
Mtr4g3989 317 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 12 316 - -
Mtr4g3989 317 ProSiteProfiles TCP domain profile. 67 125 IPR017887 -
Mtr4g3989 317 MobiDBLite consensus disorder prediction 20 40 - -
Mtr4g3989 317 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 316 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3989 Mtr-Chr4 53627904 53629662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3989 50 136 TCP Transcription Factor Family AT5G60970 80.682 8.89e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Mtr4g3989 TCP 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3989 - - mtr:MTR_4g109660 582.022