Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3984 ATGGCGAAATCCGTTTCCCCAAACGCCATCTCCACCCTGCTCTCAAATCCATCTCCTGATTCTTCATCAGATCTCCCTGACATCGTTGTTCAAGTTCTTGATCTCAAAAGTTCCGGCAACAGATACTCGTTTTCTGCCAGTGATGGAAAAAAGAAACTAAAAGGGATTATTCCTTCAAATCAGTACTCAGAAGTTCTATCTGGGAAGATTCAGAACCTTGGTTTAATTCGAATCCTTGATTACACTCTCAACGTTATTCCCAACAAATCCGAGAAGTATCTTATGTTGATCAAGTGTGAACCAGTTTCTCCTGCTCTTGAAACGGAGATCAAGAGTGAACAATCTGGCATCACCTTGAAGCCGAAGGAAGATGATGTAGTCAAGCGTGAAGGTTCTACTGCTGGGATTGTTTTGAAGCCGAAGCTGGACATGGTTTCAAAATCTGCTGCTCAGATCTTGCACGAGCAACATGCAAATTCTGCTCCTGCGAGATTGGCCATGACCCGTAGAGTGCGTCCTCTTGTTTCACTGAATCCTTATATGGGTGGTTGGACAATTAAGGTCAGTGTCACAAGCAAAGGAACTATGCGTACCTATAAGAATGCTAGAGGAGAAGGTTGTGTATTCAATGTTGAACTGACTGATGAAGATGGTACTCAGATTCAAGCAACTATGTTTAATGATGCTGCAAGGAAGTTTTATGACAAATTTGCTATGGGAAAGGTGTATTACATTTCAAAGGGATCTTTGAAAGTTGCTAACAAAAATTTCAAAACTGTGGTAAACGATTATGAAATGACATTGAATGAGAATTCTGAGGTGGAAGAGGTTGCCAATGAAGCTGCTTTTGTTCCAGAGACTAAATTCAATTTTGTCCCAATTGATCAGTTGGGTCCTTATGTGAATAAGTCTGAGCTTGTTGATTTAGTTGGAGTTGTTAAGAATGTGTCTTCAACCATGAGCATCCGTAGAAAGAGCAACAATGAGACTGTTCCAAAGCGTGACATTACTATTGCCGATGAAACCAAGAAGACAGTTGTTGTGTCTTTGTGGGGTGATCTTGCAACTAACATAGGACAAGAGTTACTTGACATGGCTGATAAATCTCCAGTAGTTGCAATCAAATCCCTCAAGGTTGGGGATTTTCAAGGTATTTCTTTGTCAGCTATAAGCAGAAGTTTAGTTCTGGTCAATCCAGAAGTACCTGAAGCTCAGAAGCTCAGATGCTGGTATGATTCTGAAGGTAAGGATGCTGCAATGGCTGCTATAAGCTCTGGTTCAATTTCATCATCTAACAGTGGAAGTAGATCAGTTTACTCTGACCGTGTTCCACTCTCTTACATAACCTCTAACCTCTCCTTGGGGGCTGAGAAGCCTGCATTCTTTAGCATCAGAGGGAATATCAGTTTCATAAAGGCAGACCAGGCAATGTGGTATCGTGCCTGTAAGACTTGTAACAAGAAAGTTACTGAAGACATGGATGCTGGGTACTGGTGTGAAAGTTGCCAGAAAAATGATGCAGAGTGCAACTTCAGATATATTATGGTTGCAAAAGTTTCTGATGCAAGTGGTGAGGCTTTCGTTTCTACCTTCAATGAGGAAGCTGAGAAGATCATTGGGTGCCCTGCTGAGGAGCTAGACAACCTTAAATCACAGGATGGAGAAGAGAATCCTTATGACATGAAATTGAAGAAAGCTACATGGATTCCACACCTCTTGCGGGTCAGTGTTTCTCAGAATGAGTATAATGGTGAGAAGAGGCAAAGGATAACAGCACGGGCCGTTGTTCCTATTGACTTTGCTGCTGAGTCTAAATTCCTCCTTGAAGACATATCAAAGATGGTAGCCTCTCATTAA 1857 0.4173 MAKSVSPNAISTLLSNPSPDSSSDLPDIVVQVLDLKSSGNRYSFSASDGKKKLKGIIPSNQYSEVLSGKIQNLGLIRILDYTLNVIPNKSEKYLMLIKCEPVSPALETEIKSEQSGITLKPKEDDVVKREGSTAGIVLKPKLDMVSKSAAQILHEQHANSAPARLAMTRRVRPLVSLNPYMGGWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDKFAMGKVYYISKGSLKVANKNFKTVVNDYEMTLNENSEVEEVANEAAFVPETKFNFVPIDQLGPYVNKSELVDLVGVVKNVSSTMSIRRKSNNETVPKRDITIADETKKTVVVSLWGDLATNIGQELLDMADKSPVVAIKSLKVGDFQGISLSAISRSLVLVNPEVPEAQKLRCWYDSEGKDAAMAAISSGSISSSNSGSRSVYSDRVPLSYITSNLSLGAEKPAFFSIRGNISFIKADQAMWYRACKTCNKKVTEDMDAGYWCESCQKNDAECNFRYIMVAKVSDASGEAFVSTFNEEAEKIIGCPAEELDNLKSQDGEENPYDMKLKKATWIPHLLRVSVSQNEYNGEKRQRITARAVVPIDFAAESKFLLEDISKMVASH* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3984 618 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mtr4g3984 618 Gene3D - 284 424 IPR012340 -
Mtr4g3984 618 CDD RPA1_DBD_C 448 613 IPR013955 -
Mtr4g3984 618 Gene3D - 4 112 IPR012340 -
Mtr4g3984 618 SUPERFAMILY Nucleic acid-binding proteins 289 416 IPR012340 -
Mtr4g3984 618 Pfam Replication protein A OB domain 301 397 IPR031657 -
Mtr4g3984 618 Gene3D - 425 614 IPR012340 -
Mtr4g3984 618 CDD RPA1_DBD_A 173 276 - -
Mtr4g3984 618 SUPERFAMILY Nucleic acid-binding proteins 440 614 IPR012340 -
Mtr4g3984 618 CDD RPA1_DBD_B 306 412 - -
Mtr4g3984 618 Pfam Replication factor-A C terminal domain 461 607 IPR013955 -
Mtr4g3984 618 PANTHER REPLICATION FACTOR A 1, RFA1 5 612 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr4g3984 618 SUPERFAMILY Nucleic acid-binding proteins 172 280 IPR012340 -
Mtr4g3984 618 SUPERFAMILY Nucleic acid-binding proteins 1 102 IPR012340 -
Mtr4g3984 618 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 612 - -
Mtr4g3984 618 Gene3D - 170 279 IPR012340 -
Mtr4g3984 618 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 613 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr4g3984 618 Pfam OB-fold nucleic acid binding domain 185 265 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3984 Mtr-Chr4 53583863 53587333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3984 1 613 Core DNA Replication Machinery Family AT5G08020 68.618 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3984 K07466 - gmx:100777091 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3984 4 53583863 53587333 Mtr4g3984 4 53583863 53587333 ECH